| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3275 |
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| Symbol | |
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| ID | 6410945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3524376 |
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| End bp | 3525644 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642713151 |
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| Product | lipoprotein releasing system, transmembrane protein, LolC/E family |
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| Protein accession | YP_001992252 |
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| Protein GI | 192291647 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.314483 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGACC CAGTTCGAAC TCCTCCTTTC GCGCCATTCG AGTGGCTTAT TTCCGGGCGC
TATCTGCGTG CGCGCCGGCG CGAGGGGTTC ATCTCGGTGA TCGCCGGCTT CTCCTTCCTC
GGCATCATGC TCGGGGTGGC GACGCTGATC ATCGTCATGG CGGTGATGAA CGGCTTCCGC
AAAGAGCTGC TCGACAAGAT TCTCGGCCTC AATGGCCATC TGTTGGTACA GCCGCTGGAA
AGCCCGCTGA CCGACTGGAA GGACGTCGCC GACAGGCTCA GCGGCGTGCA GGGCATCAAG
CTGGCAGCTC CCGTGGTCGA CGGCCAGGCG CTGGCATCGT CGCCGTTCAA CGCCTCGGGC
GTATTCGTGC GCGGCATCCG CGCCGACGAT CTCAACCGAC TGTCGTCGAT CGCCAATCAC
CTCAAGCAGG GCACGCTGGA AGGCTTCGAC GACAGCCAGG GCGTCGCGAT CGGACGCCGG
CTCGCCGATC AGCTGTCGCT GCACGCCGGC GACAGCATCA CGCTGGTGGC GCCGCGCGGC
GCTGTGACGC CGATGGGCAC CACGCCGCGG ATCAAACCTT ACAAGGTCGC CGCGGTGTTC
GAGATCGGCA TGTCCGAATA CGACTCGACC TTCGTGTTCA TGCCGCTGAA GGAAGCGCAG
GCGTATTTCA ACCGTGCCAA CGACGTCACC GCGATCGAGG TCTATACGGA TAACCCCGAC
CGCATCGATG TCTTCCGCAA AGCGGTGACC GAGGCGGCCG GGCGGCCGGT GTTTCTGGTC
GACTGGCGGC AGCGCAACTC GACGTTCTTC AATGCGCTTC AGGTCGAGCG CAACGTCATG
TTCCTGATCC TGACGCTGAT CGTGCTGGTG GCCGCGCTCA ACATCATCTC CGGCCTGATC
ATGCTGGTGA AGGACAAGGG TGCCGACATC GCTATCCTGC GCACCATGGG TGCGAGCCAG
GGCTCGATCA TGCGGGTGTT CCTGATCACC GGCGCGGCGA TCGGCGTGGT CGGCACGCTG
ACCGGGTTCT TCGTCGGCGT GCTGGTGTGC ATGAACATCG AGTCGATCCG GCAGTTCCTG
TCCTGGGTCA CCAACACCGA GCTGTTCTCG CCGGAGCTGT ACTTCCTGTC GAAGCTGCCG
GCCGAGATCG ATTTCGCCGA AACCAGCGCG GTGGTGATCA TGGCGCTGAC GCTGTCGTTC
CTCGCCACGT TGTACCCGTC GTGGCGCGCC GCGCGCCTCG ATCCGGTCGA CGCGCTGCGC
TACGAGTAA
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| Protein sequence | MNDPVRTPPF APFEWLISGR YLRARRREGF ISVIAGFSFL GIMLGVATLI IVMAVMNGFR
KELLDKILGL NGHLLVQPLE SPLTDWKDVA DRLSGVQGIK LAAPVVDGQA LASSPFNASG
VFVRGIRADD LNRLSSIANH LKQGTLEGFD DSQGVAIGRR LADQLSLHAG DSITLVAPRG
AVTPMGTTPR IKPYKVAAVF EIGMSEYDST FVFMPLKEAQ AYFNRANDVT AIEVYTDNPD
RIDVFRKAVT EAAGRPVFLV DWRQRNSTFF NALQVERNVM FLILTLIVLV AALNIISGLI
MLVKDKGADI AILRTMGASQ GSIMRVFLIT GAAIGVVGTL TGFFVGVLVC MNIESIRQFL
SWVTNTELFS PELYFLSKLP AEIDFAETSA VVIMALTLSF LATLYPSWRA ARLDPVDALR
YE
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