| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3099 |
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| Symbol | |
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| ID | 6410770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3343682 |
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| End bp | 3345421 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642712979 |
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| Product | thiamine pyrophosphate domain protein TPP-binding |
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| Protein accession | YP_001992080 |
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| Protein GI | 192291475 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.283139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGAAC AAGATCGCCT GGTCGGCGGA CAATTGCTGG CAAAGACGCT GAAGGCCGCC
GGTGTAAGCC AGGCGTTTGC GCTGCACGGC GGACATCTCG AAGCGCTGCT CAAGGGGTGC
ATCGAGGAAG AGATTGCACT GATCGATTTC CGTCATGAGT CGTCAGCCGG CCACGCTGCC
GATGCGTATG CGCGTGCGAC CGGCAAGCCC GGGGTATGCA TCGTCACCGC CGGGCCAGGG
TTCACCAACG TACTGTCGGC GATGACCAAT GCGCAGCTCG ATGGCTCACC GGTGCTGTTC
ATCGTCGGCG CCCCGCCGCT GCGTGAGGTG GAAACCAACC CGCTCCAGGG CGGGATCGAT
CAGGTTGCGA TGGCTCGGCC GGCGGTGAAA TGGGCGTTCT CGATCCCCAG CACGGAGCGG
ATCGCCGATC TCACCGCGAT GGCGATCCGC AAGGCGATGA CGTTGCCGCG GGGCGCCGTG
CTGCTCGAAG TGCCGATCGA CGTGCTGCAT ATGAGCGTCG CTGCTGCGCG CGCGACTCCT
CCGGCCGGCG TCGGCGTCAA TCCGCGCCCG GCGCCTGCCC CAGCTGAGGT CGCGCGATTA
GTTGAACTGC TGCGGGCAGC CAAACGCCCT GTGCTGATCG CCGGCAATGG CGCAGCCAAT
CATGAAACGG CGGAGGCGCT GCGAGCACTG TGCGCCAGGG TGCCGCTGCC GGTCTTCACC
AAGTCTCTGG CGGCCGGCAT CCTGCCGCCG GGCCACCGCT GCAATGGCGG TGCGGCGGGC
AACCTCGCCT TGTTGCCGGT GCTGGGGATC GATCGGCCGG ATCTCGTTAT CCTGCTCGGC
GGCAAACTCG GCCTGCTGCT CGGCGGACGT TCGGGCGCAC TGGTGCCGCA TGGCGCAACC
CTGGTGCAGA TCCACGGCGA TGCGGCCGAG ATGGGCCGGA TCCGCGACGT CGATCTGGCC
ATCCTGGCGG ATTGCACCGA GGCGACGCGC GCGCTCGACT CAGCTCTGAA GGACGGCCAG
CTTGAGGAGA TGGAGGCTTG GCGGGCGCAG GCGGTCTCGG CAACCGGGCT GTTCGCGACG
ATGTTTCCCG AGCGCGAAAC GACACGAGGC ATTCATCCGT ATCATGCGGC CCGCGCCGTC
GCTGACGCGG CTGGGCCTGA GGCTGCCTAT GTGTTCGATG GCGGGGAAGC GGCGTCGTGG
GGCGCCGCGG CAGCTGTCGT CGACCGGCCG GGAGCGCTGC TCGGTCACGG CTATCTCGGC
TGCCTGGGGA TCGGACCGGG GTTCGCGATC GGCGCCCAGC TCGCCGCTCC GGAGCGCCGG
GTGATCCACC TGACCGGTGA CGGCGCGCTT GGATTCCACC TGCAGGAACT CGACACCATG
GTCCGGCACC GCTTGCCGAT CGTCACCGTG GTTCTCAACA ATGAAGTCTG GGGAATGTCG
ATCCACGGAC AGCAAATCAT GTTCGGCAGC AACTATCATG TGATCTCGAA GCTGGGCGGA
ACGCAGTTTG CCAACATCGC TCAGGCCTTC GGCTGTCACG CCGAGCGTGT AACCCGGTTT
GCCGACCTTG CGCCGGCGCT GGAGCGCGCC TTCGCCAGTG GTGGCCCGGC CTTTATCGAG
GTGATGACGG ATGCCGACGT TGTGCATCCG GTCACGGTGG CGATGCTCGG TCAGGTTCAG
GAAGGCAGCA ACGACGTGTT GATCCCCTAC TACGAGAACA TCCCCGCAGA TACGGCCTGA
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| Protein sequence | MAEQDRLVGG QLLAKTLKAA GVSQAFALHG GHLEALLKGC IEEEIALIDF RHESSAGHAA
DAYARATGKP GVCIVTAGPG FTNVLSAMTN AQLDGSPVLF IVGAPPLREV ETNPLQGGID
QVAMARPAVK WAFSIPSTER IADLTAMAIR KAMTLPRGAV LLEVPIDVLH MSVAAARATP
PAGVGVNPRP APAPAEVARL VELLRAAKRP VLIAGNGAAN HETAEALRAL CARVPLPVFT
KSLAAGILPP GHRCNGGAAG NLALLPVLGI DRPDLVILLG GKLGLLLGGR SGALVPHGAT
LVQIHGDAAE MGRIRDVDLA ILADCTEATR ALDSALKDGQ LEEMEAWRAQ AVSATGLFAT
MFPERETTRG IHPYHAARAV ADAAGPEAAY VFDGGEAASW GAAAAVVDRP GALLGHGYLG
CLGIGPGFAI GAQLAAPERR VIHLTGDGAL GFHLQELDTM VRHRLPIVTV VLNNEVWGMS
IHGQQIMFGS NYHVISKLGG TQFANIAQAF GCHAERVTRF ADLAPALERA FASGGPAFIE
VMTDADVVHP VTVAMLGQVQ EGSNDVLIPY YENIPADTA
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