| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2888 |
|---|
| Symbol | |
|---|
| ID | 6410557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3150465 |
|---|
| End bp | 3151712 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642712768 |
|---|
| Product | oxidoreductase/nitrogenase component 1 |
|---|
| Protein accession | YP_001991871 |
|---|
| Protein GI | 192291266 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2710] Nitrogenase molybdenum-iron protein, alpha and beta chains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCGC ATTTGATGCG ACCGCGCGCC GGATGCGCGC TGCACGGGGC GCTTTACGCC
GCAACTGCGA TCGATGGCGT GACTCCGCTT GTCCATGCGA CACCCGGCTG CGGTGTACAA
GCCGGGCTGT GGCAGGGGGT AGGCGGTTGC GGCGTGTCGT GGCCGACGTC CAATCTGTCG
GAGAAGCACA TCGTGTTTGG CGGTGCGTCG CGGCTGCGCG AGCAGATCAA GAATACGCGC
GGCGTGGTGT CGGGCGAAAT CACCGTGGTT CTGACCGGGT GCCCGGCCGA GATGATCGGC
GACGACGTCG AGGCGATGGC GCAAGAGGCG CGGGACGCCG GGGACGAAGT GCTCGACCTG
GCGACCGCTG GATTTCGCGG CTCCGCCTAC CACGGCTATC AATCGTTCCT GCTGGCGGCT
GTGGAACGAA CTGTCGTTCC GGGGCCCACC CGAGCTGGCC TGGTCAACAT TCTCGGTCCC
GTCCCGCATC AGGACGCGAC GTGGCTCGCG GAAATCGAGG AGCTGTCCCG ACTGATCGCA
GGTGTCGGCC TGATCCCGAA TCCGATTTTC GGTCCGTTCG GGGGGCTCTC GAGCCTGCGG
GCGACCGCAC AGGCCGAACT AAGCGTCTCG TTGTCGCCCT GGGGAGGGGC TGCGGTCCGC
GCGCTTGATG ACCGCTTCGG CATTCCCTGG ATCGAAAGCG CGGGTTTGCC CGTCGGCGCG
GCGGCGACCG GCGCTCTGCT GGAGAGGATC GTGGCCGCCG CCGGTGAGGT GGACGATGCG
GCGGCGCGGA TCTTCATCGA TCACGAGCGG CAGCGCGAGG CGTATTTCAT CGATCGGCTG
CTGGAGACGC TCTATCGACA AGGTGGGGCG CGCGGCTTTG CGGTTGCCTT GCCGAGTCTG
CACGTGGGAG GCATCGTTCG CTTTCTCAAC CGGACCCTGG GCTGGTCGCC GGCCGCGATC
GTTGTCACCG ACAATCCGCC TGCGGAGCAT CGCAGCACGC TCGAAGATGA CCTGCCCGTT
GTGCATTACA GCGAAGACGA CGAAGAAATT GCCGCCCTTC TCGGTGGCAG CGGCGCCGAG
ATCGTGTTCG GCAGCTCCCT GGAGCGCGCG GTTGCGGATC GCCTCGCAGT GCCGCTGATC
GAATGCGCCA CGCCGACCCG CCGGCTGAGC CTGACAAGCG GTTACGGCGG CTTTCGCGGC
GGTCTGACGT TGCTGGAGGC GATCGTGACG GCGTCGGAGC AAGCGTAG
|
|---|
| Protein sequence | MAAHLMRPRA GCALHGALYA ATAIDGVTPL VHATPGCGVQ AGLWQGVGGC GVSWPTSNLS
EKHIVFGGAS RLREQIKNTR GVVSGEITVV LTGCPAEMIG DDVEAMAQEA RDAGDEVLDL
ATAGFRGSAY HGYQSFLLAA VERTVVPGPT RAGLVNILGP VPHQDATWLA EIEELSRLIA
GVGLIPNPIF GPFGGLSSLR ATAQAELSVS LSPWGGAAVR ALDDRFGIPW IESAGLPVGA
AATGALLERI VAAAGEVDDA AARIFIDHER QREAYFIDRL LETLYRQGGA RGFAVALPSL
HVGGIVRFLN RTLGWSPAAI VVTDNPPAEH RSTLEDDLPV VHYSEDDEEI AALLGGSGAE
IVFGSSLERA VADRLAVPLI ECATPTRRLS LTSGYGGFRG GLTLLEAIVT ASEQA
|
|---|
| |