| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2861 |
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| Symbol | |
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| ID | 6410530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3120487 |
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| End bp | 3121488 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642712741 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_001991844 |
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| Protein GI | 192291239 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGGATTG GCAATATTGC GGTGCCTGAT CCGGTGTTCT TGGCGCCGAT GACAGGCATT
ACCGATGCGC CGTTCCGCCG GCAAGTCGCG GAGCTAGGGG CCGGTCTGGT GGTGTCGGAG
ATGACTGCCA GCGAAGATCT GGTGGCCGGC CGGCGGATGT CGGTCCGTCG CTGCGACAAG
GTCGGCCAGG GGCCGCACGT CGTCCAGCTT GCCGGCTGCG AGCCGCGCTG GATGGCGGAG
GGCGCGCGGA TCGCGGAAGC CGGCGGCGCC GACATCATCG ACATCAACAT GGGCTGCCCG
GCGCGGCACG TCACCGGCGG TCTGTCCGGT TCGGCGCTGA TGCGCGACCT TGATCACGCG
CTGACGCTGA TCGAAGCAAC GATCGGCGCG GTGCGGGTGC CGGTGACGCT GAAGATGCGG
CTCGGCTGGG ACGATCGTTC GCGCAACGCG CCGGAGCTGG CGCGGCGTGC GCAGGACGCC
GGTATTCAGC TTGTCACGGT TCACGGCCGC ACCCGGCAGC AGTTCTACAA GGGCGAAGCT
GATTGGGACG CGGTGCGCGC CGTCAGGGAT GCGATCTCGA TTCCGCTGGT GGTCAATGGC
GATATCACCT GCCACGCCAG CGCGGTCGAA GCGCTGAAGC GCTCCGGTGC CGATGCAGTG
ATGATCGGTC GCGGCGCGCA GGGGCGGCCG TGGCTGCCGG GGCAGGTCGG CCGCCAGCTC
ACCACGGGAA AAGCCGAGGC CGAGCCGTCG CTGACCATGC AGCGCGATTA CTTGCGCGCG
CTCTATGACG ACATCCTGGC GCTGTACGGC GTCAAGATCG GGCTGCGTCA TGCCCGCAAG
CATCTCGGCT GGTCGCTCGA GGTCGCCGCC TCAACTGCCG GCGCCTCGCC GGACGTTCTG
AAGAGCTGGC GCGTCGCGAT CCTGACCGAA GAGAATCCGG CCCGCGTGCA CCGTGCGCTC
GCCGATGCCT ACGAAGAATT CGCCTGGAGG GCCGCCGCAT GA
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| Protein sequence | MRIGNIAVPD PVFLAPMTGI TDAPFRRQVA ELGAGLVVSE MTASEDLVAG RRMSVRRCDK
VGQGPHVVQL AGCEPRWMAE GARIAEAGGA DIIDINMGCP ARHVTGGLSG SALMRDLDHA
LTLIEATIGA VRVPVTLKMR LGWDDRSRNA PELARRAQDA GIQLVTVHGR TRQQFYKGEA
DWDAVRAVRD AISIPLVVNG DITCHASAVE ALKRSGADAV MIGRGAQGRP WLPGQVGRQL
TTGKAEAEPS LTMQRDYLRA LYDDILALYG VKIGLRHARK HLGWSLEVAA STAGASPDVL
KSWRVAILTE ENPARVHRAL ADAYEEFAWR AAA
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