| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1942 |
|---|
| Symbol | |
|---|
| ID | 6409602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2095173 |
|---|
| End bp | 2096252 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642711828 |
|---|
| Product | tartrate dehydrogenase |
|---|
| Protein accession | YP_001990940 |
|---|
| Protein GI | 192290335 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAATCAGA GCAAAGATCA GTATCGCATC GCCGTGATCG CGGGCGACGG CATCGGCAAG
GAAGTGATGC CGGAAGGATT GCGCGTGCTC GAAGCGGCAG CGAAGAAACA TCGGGTCAAG
CTGGTGTTCG ACCATTTCGA TTTCGCCAGC TACGACTATT ACGAAAAGCA CGGCCAGATG
ATGCCGGACG ACTGGAAGGA GAAGATCGGC GGTCACGATG CGATCTTCTT CGGCGCGGTC
GGTTGGCCGG CCAAGATCCC GGATCACATT TCGCTGTGGG GTTCGCTGAT CAAGTTCCGC
CGCGAGTTTG ATCAGTACGT CAACCTGCGC CCCGTGCGGC TGATGCCCGG GGTGCCGTCG
CCGCTCGCCG GACGCAAGCC GGGAGACATC GACTTCTGGG TGGTGCGCGA GAACACCGAG
GGCGAATACT CCTCGGTCGG CGGCCGGATG TTCCCCGACA CCGAGCGTGA GTTCGTCACC
CAGCAGTCGG TGATGACCCG GGTCGGCGTC GACCGCATTC TGAAGTTTGC GTTCGAACTG
GCACAGTCGC GGCCGAAGCG GCATCTCACC TCGGCGACCA AGTCGAACGG CATCTCGATC
ACCATGCCGT ATTGGGACGA GCGCGTCGAA GCGGTGGCGA AGAGCTACCC GGAGGTGAAG
TGGGACAAGT ACCACATCGA CATCCTCACG GCGCACTTCG TGCTGCATCC GGACTGGTTC
GACGTGGTGG TCGGCTCCAA TCTGTTCGGC GACATCCTGT CCGACCTCGG TCCGGCCTGC
ACCGGCACCA TCGGCATCGC GCCGTCGGGC AATATCAATC CGGAAGGCGA CTTCCCGAGC
GTGTTCGAGC CGGTGCACGG CTCGGCTCCG GACATCGCCG GCCAGGGCAT CGCCAATCCG
ATCGGAATGA TCTGGTCGGG CGCGATGATG CTCGAGCACC TCGGCGAGAA GCAGGCGGCG
GATTCGATCG TCAAGGCGAT CGAACGCACC TTGGAGGAGC GCACGCTCCG CACCCGCGAT
CTCGGTGGTC AGGCCGACAC CTCGGCCTGC GGCAAGGGCG TGTCCGAGAT GGTGGAGTAA
|
|---|
| Protein sequence | MNQSKDQYRI AVIAGDGIGK EVMPEGLRVL EAAAKKHRVK LVFDHFDFAS YDYYEKHGQM
MPDDWKEKIG GHDAIFFGAV GWPAKIPDHI SLWGSLIKFR REFDQYVNLR PVRLMPGVPS
PLAGRKPGDI DFWVVRENTE GEYSSVGGRM FPDTEREFVT QQSVMTRVGV DRILKFAFEL
AQSRPKRHLT SATKSNGISI TMPYWDERVE AVAKSYPEVK WDKYHIDILT AHFVLHPDWF
DVVVGSNLFG DILSDLGPAC TGTIGIAPSG NINPEGDFPS VFEPVHGSAP DIAGQGIANP
IGMIWSGAMM LEHLGEKQAA DSIVKAIERT LEERTLRTRD LGGQADTSAC GKGVSEMVE
|
|---|
| |