| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1937 |
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| Symbol | |
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| ID | 6409597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2089413 |
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| End bp | 2090192 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642711823 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001990935 |
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| Protein GI | 192290330 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.157312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTGC ATCTGCGCGG CAAGCGCGTC CTCATCACCG GCGCATCAAA GGGCATCGGC
GCCGCCGCGG CCGAAGCTTT CGCCGAGGAA GGCTGTCATC TGCGGCTCGC CGCCCGCAAC
AAGGATGCGC TGGAAGCCCT CGCCGCGCGG CTGCGCGACC ATCACGGCGT CGGCGTCGCG
GTCCACGTCG CGGACCTTCG CAGCAAGGCG GACCTGGCTC AGCTCGCCGC CCAGGCAACG
GACATCGACA TCCTGATCAA CAATGCCGGC GATATTCCGC GCGGCACCAT CGATGCGATC
GACGACGCCA CTTGGCGCCA TGCGTGGGAT CTGAAGGTGT TCGGCTTCAT CGATCTCACC
CGGCTGGTGT ACGCGCAGAT GAAGGCGCGC GGCGGCGGCG TCATCATCAA CGACATCGGC
GCGGCCGGCG AACGGCTCGA CGCCGGTTAT ATCTGCGGCT CCGCCGGCAA CGCTGCGCTG
ATGGCGTTCA CCCGGGCGCT CGGCAGCCGC AGCCTCGCCG ACAACATCCG CGTCGTCGGC
ATCAATCCCG GGCCGGTCGG CACCGATCGC TATCTCGGGC GGATGAAGGG CCGCGCCAAA
GCAGAGCTCG GCGACGAGAG CCGCTACCTC GAGCTGCAGA AAAACCTTCC GCTCGGCCGC
CCCGCGCAAC CGCGCGAGAT CGCCGACCTG ATGGCCTATC TGGCCTCCGA CCGATCCGGC
TACACCACAG GCGCGATTTT CTCGGTCGAC GGCGGACTCA GCGCCGGCTG GCCGGCCTGA
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| Protein sequence | MDLHLRGKRV LITGASKGIG AAAAEAFAEE GCHLRLAARN KDALEALAAR LRDHHGVGVA
VHVADLRSKA DLAQLAAQAT DIDILINNAG DIPRGTIDAI DDATWRHAWD LKVFGFIDLT
RLVYAQMKAR GGGVIINDIG AAGERLDAGY ICGSAGNAAL MAFTRALGSR SLADNIRVVG
INPGPVGTDR YLGRMKGRAK AELGDESRYL ELQKNLPLGR PAQPREIADL MAYLASDRSG
YTTGAIFSVD GGLSAGWPA
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