Gene Rpal_1841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1841 
Symbol 
ID6409500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp1977581 
End bp1978261 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content65% 
IMG OID642711729 
ProductABC transporter related 
Protein accessionYP_001990842 
Protein GI192290237 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.656554 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCTGACG TCCTCAAGCT CGACGGGATC CGCAAATCCT ACAATGTCGG CACGCCGGTC 
GAGACCGAGG TGCTGCACGG CATCGACCTG ACGATGCAGC GCGGTGACTT CCTGGCGCTA 
ATGGGGCCGT CAGGTTCTGG CAAGTCGACG CTGCTCAACA TCATCGGCCT GCTCGACCGC 
CCGACCGGCG GACGCCTCCT GATCAATGGC GAGGACACCG GGCAGCTCAG CGACTCGGCG 
CTGACACACC TGCGCGGCCA CGCCATCGGA TTCGTGTTCC AGTATCACTA TCTGATCTCG 
GCGTTCACCG CGCGGGAGAA CGTGATGATG CCGATGCTGG TCGACCGCGG CCGGCCCGAC 
ACGGCGATGC AGCAGCGCGC CGACGAACTG CTCGACCGCG TCGGCCTCAG CCGCTGGCGC 
AACAACAGCG CCACCAACAT GTCCGGCGGC CAGCAGCAGC GCGTTGCGGT TGCGAGGGCG 
TTGGCGATGG ACCCGGATCT CGTGCTTGCC GACGAGCCGA CCGGCAACCT CGACACCAAA 
TCCGCCAATG ACGTGTTCGA ACTGATGCGC CAGATCAACC GCGAACGCGG CACCACGTTT 
CTGCTCGTCA CCCACAACGA CGACCTTGCC GAACGCTGCG ACCGCATCGT CCGGGTGGTG 
GATGGCAAGA TCGCGGGGTA G
 
Protein sequence
MADVLKLDGI RKSYNVGTPV ETEVLHGIDL TMQRGDFLAL MGPSGSGKST LLNIIGLLDR 
PTGGRLLING EDTGQLSDSA LTHLRGHAIG FVFQYHYLIS AFTARENVMM PMLVDRGRPD 
TAMQQRADEL LDRVGLSRWR NNSATNMSGG QQQRVAVARA LAMDPDLVLA DEPTGNLDTK 
SANDVFELMR QINRERGTTF LLVTHNDDLA ERCDRIVRVV DGKIAG