| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1600 |
|---|
| Symbol | |
|---|
| ID | 6409257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1711835 |
|---|
| End bp | 1712539 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642711489 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001990604 |
|---|
| Protein GI | 192289999 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.94084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAGG TCGAAGGTCT GGTCGCAGGC TATGGCGGCT CGCCGATCCT GCGCGACGTG
TCGCTCAGGC TCGCGGCCGG TGAAATCGTC GGCCTGCTCG GTGCCAACAA TGCCGGCAAG
ACCACGCTGA TCAACTGCCT GTCTGGAATC GTGACGCCGA TGTCCGGCCG CATCCTGTTC
GAGGGGCAGG ACGTCACCCG CACCACGGCG CGCGAGCGCG TCGAACTCGG CATCATCCAG
GTGCCCGAAG GGCGGCTGGT GTTTCCGGAG ATGAGCGTGC GCGAGAATCT GCTGCTCGGC
GGGTTCTGCG ACCGTGCCCG GCCGCATCGC CCGGCGCAGA TGGAAAAGGT GCTGGAGCTG
TTCCCGCGCC TGAAGGAGCG GCTGACTCAG GCCGCCGGCA CGCTGTCGGG CGGCGAGCAG
CAAATGCTGG CGATCGGCCG CGGCCTGATG GCGGAAGCGC GCATCCTGAT GCTGGACGAG
CCCTCGCTCG GCCTGTCGCC GCTGTTCGTC CAATACATCT TCGAGATCAT CGACCAATTG
CACCGGGGCG GCCTCACCAT GCTGCTGGTC GAGCAGAACC TCAATCTGAC GCTGCGGCAT
GCGCAGCGCT GCTACGTGCT CGAACGCGGC CAGGTCGCGG TCGAGGGCGC GGCCGACTTG
GTCAGGGACG ATCCGCGCAC GCGGCAGGCC TATCTGGGCC TGTGA
|
|---|
| Protein sequence | MLEVEGLVAG YGGSPILRDV SLRLAAGEIV GLLGANNAGK TTLINCLSGI VTPMSGRILF
EGQDVTRTTA RERVELGIIQ VPEGRLVFPE MSVRENLLLG GFCDRARPHR PAQMEKVLEL
FPRLKERLTQ AAGTLSGGEQ QMLAIGRGLM AEARILMLDE PSLGLSPLFV QYIFEIIDQL
HRGGLTMLLV EQNLNLTLRH AQRCYVLERG QVAVEGAADL VRDDPRTRQA YLGL
|
|---|
| |