Gene Rpal_1587 details

Gene Information

• Locus tag: Rpal_1587
• ID: 6409244
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 1695225
• End bp: 1697048
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642711476
• Product: allophanate hydrolase
• Protein accession: YP_001990591
• Protein GI: 192289986
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
• TIGRFAM ID: [TIGR02713] allophanate hydrolase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.556353
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGGCTG CTGAACTCAC CACCTTCCCG ACGATCGCGT CGCTGCACAC CGCCTATGCG 
GCCGGCGCCT CTCCGGCCGA GATCATCGCA GCGACGTATC GCCAGCTCGA AGCCGTGGCC 
GATCCCGGCA TCTTCATCAC GCTGCGGCCA GAGCACGACG TCCTTGCCGA CGCCGCCGCA 
CTCGGCCAGT TCGATCCCGA TACGAAGCCA CTGTGGGGCA TCCCATTCGC CGTGAAGGAC 
AATATCGACG TCGCGTGCCT TCCGACCACG GCCGCCTGCC CCGGCTTCGC GTCCACGCCG 
AGCGAAACTG CGTTTGCGGT TCAGCGCCTG CTCGATGCCG GCGCGGTCCT GATCGGCAAG 
ACCAACCTCG ATCAGTTCGC CACCGGACTG GTCGGCGTTC GCACGCCATA TCCAGTGCCG 
CGCAATGCGA TCGATCCGCG CTACGTGCCC GGCGGGTCGA GCAGCGGCTC GGCCGTGGCG 
GTGGCGCATG GCCTGGTGAC GTTCGCGCTC GGCACCGACA CCGCAGGCTC CGGCCGTGTC 
CCGGCCGCGC TCAACAACAT CGTCGGACTG AAGCCATCGC TCGGCAGCGT GTCGTCGCGT 
GGCATGGTGC CGGCGTGCCG GACCCTCGAT ACGATCTCGG TGTTCGCCGG CACGGTCGAC 
GACGCCCACG CGATCTATCG CATCATGGCC ACGTTCGACG GCGTCGATCC CTGGTCGCGG 
CCGCATCCCG CAGCGGCTGC CAACCCTCCA GCCTTGCCGC CCGGTCTGCG CGTCGGTGTG 
CCGGATACGG TCAGCCGCAA ATTCGCCGGC GACCTGCAGT CCGAACGAGC GTTCGACCTC 
GCGGTGGCGG ACCTTGCGAC CGTGGTGCCC GCGCCCGCTC GTGCGGTGGA TCTGTCGCCC 
TTGTTCGAGG TCGCCGATCT GCTCTACAGC GGACCGTGGG TCGCGGAGCG CTATCAGGCG 
ATCCGACAGG TGATTGAGAC GGCACCGGAG TTGCTGCATC CGGTAACACG GAAGATCATC 
GGCTCTGCGA CGGCGTTCAG CGCCGCCGAT GCGTTTGGCG GCCTCTACCG ACTGGCCGAA 
CTGCGCCGCG CCGCTGATGC GATCTGGAGC GGCATCGACG TGCTGATCGT ACCGACCTAT 
CCCCGCCCGC GCATGGTCGC GGAGCTGGAG GCTGATCCGA TCGGTCCGAA CAGCGAGCTC 
GGCACCTACA CCAATTTCGT GAACCTGCTC GACCTGTGCG CGCTGGCTGT GCCGAGTCGC 
TTCCGCGCCG ATGGTTTTCC GTCGGGCGTG ACGCTGATCG CACCGGCGGG CCGCGACGAC 
CTCCTCGCCG CGCTGGGCGA GCGCCTTCAC GCCGCAAGCG GCGTACACTT AGGCGCCAGC 
AGCACCAAGG TGCCGGCTTC CATCGAAGTA TCGCCCTCTG CCGTTGCGAA TGAGATCGAG 
CTGGTGGTGG TCGGCGCACA TCTGTCCGGC ATGCCGCTCA ATCACGAACT CATCAGCCGC 
GGCGCGCGTT TCCTGCGCGC GATCCCGACC GCGCCCGACT ACAAGCTGTT CGCCCTGCAG 
GGCGGCCCAC CATTCAGGCC CGGCCTGCTG CGCGTCGCCC CCGGCGAAGG CACCCCAATC 
GCAACCGAGG TTTGGGCGAT CTCCGCCGAA GGATTCGGCA GCTTCGTCGC CGGCATCCCC 
GCGCCTCTTG GAATCGGGAC TACGCGCCTC GCCGACGGCA CCGCGCCAAA GGGGTTCATC 
GTCGAAGCCG AGGGCCTGAA AGGCGCTAGG GATATTTCGT CATTCGGCGG ATGGAGGGCC 
TACATCAAAA GCCTTGCCGG GTAA 

 

Protein sequence

MSAAELTTFP TIASLHTAYA AGASPAEIIA ATYRQLEAVA DPGIFITLRP EHDVLADAAA 
LGQFDPDTKP LWGIPFAVKD NIDVACLPTT AACPGFASTP SETAFAVQRL LDAGAVLIGK 
TNLDQFATGL VGVRTPYPVP RNAIDPRYVP GGSSSGSAVA VAHGLVTFAL GTDTAGSGRV 
PAALNNIVGL KPSLGSVSSR GMVPACRTLD TISVFAGTVD DAHAIYRIMA TFDGVDPWSR 
PHPAAAANPP ALPPGLRVGV PDTVSRKFAG DLQSERAFDL AVADLATVVP APARAVDLSP 
LFEVADLLYS GPWVAERYQA IRQVIETAPE LLHPVTRKII GSATAFSAAD AFGGLYRLAE 
LRRAADAIWS GIDVLIVPTY PRPRMVAELE ADPIGPNSEL GTYTNFVNLL DLCALAVPSR 
FRADGFPSGV TLIAPAGRDD LLAALGERLH AASGVHLGAS STKVPASIEV SPSAVANEIE 
LVVVGAHLSG MPLNHELISR GARFLRAIPT APDYKLFALQ GGPPFRPGLL RVAPGEGTPI 
ATEVWAISAE GFGSFVAGIP APLGIGTTRL ADGTAPKGFI VEAEGLKGAR DISSFGGWRA 
YIKSLAG