| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1388 |
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| Symbol | |
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| ID | 6409045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1461815 |
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| End bp | 1462591 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711287 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001990403 |
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| Protein GI | 192289798 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCCCG ACTCCCAAAA GCCGCGCCCG CCCGAGAGCA ACGCGCCGCG CCGGACCATG
ATCCTGACCG GCGCCAGCCG CGGCATCGGC CACGCCACGG TGATCCGCTT CTCTAGCGCC
GGCTGGCGAG TGATCACTTG CTCGCGCCAT CCGTTTCCGG AGCAGTGCCC CTGGGGGGCC
GGGCCGGAAG ACCACATTCA GGTCGACCTC GGCGACCGTG CCGACACGCT GCGGGCGATC
GACGAGATCC GCGAGCGGCT CGACGGCGGT GTGCTGCATG CACTGGTCAA TAACGCCGCG
ATCTCCCCAA AGGCGGCGGG CGGCGCCCGT CTCGGCACCA TCGACACCGA AATCGATACC
TGGGAGCACG TGTTCCGGGT GAATTTCTTC GCCCCGATCC TGATGGCGCG CGGGCTGATC
GAGGAACTGA AGGCGGTCAA GGGGTCGGTG GTGAACGTCA CCTCGATCGC CGGTTCGCGG
GTGCACCCGT TCGCCGGCGC CGCCTACGCC ACCTCGAAGG CAGCGCTCGC GGCGCTGACC
CGGGAGATGG CGGCGGATTT CGGCCATGTC GGCGTCCGGG TCAACTCGAT CGCGCCGGGC
GAGATCGATA CGTCGATCCT GTCGCCGGGC ACCGAAAAGA TCGTCGAGGA GCAGATCCCG
ATGCGCCGCC TCGGCACCCC GGACGAGGTT GCCAAGATCA TCTACGTGCT GTGCACCGAG
ACGTCGTCTT ATGTGAACGG CGCCGAAATC CACATCAACG GCGGCCAGCA CGTTTGA
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| Protein sequence | MSPDSQKPRP PESNAPRRTM ILTGASRGIG HATVIRFSSA GWRVITCSRH PFPEQCPWGA
GPEDHIQVDL GDRADTLRAI DEIRERLDGG VLHALVNNAA ISPKAAGGAR LGTIDTEIDT
WEHVFRVNFF APILMARGLI EELKAVKGSV VNVTSIAGSR VHPFAGAAYA TSKAALAALT
REMAADFGHV GVRVNSIAPG EIDTSILSPG TEKIVEEQIP MRRLGTPDEV AKIIYVLCTE
TSSYVNGAEI HINGGQHV
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