| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1046 |
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| Symbol | |
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| ID | 6408702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1115328 |
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| End bp | 1116626 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642710959 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_001990076 |
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| Protein GI | 192289471 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGACGA AACGATATCG GAAGTCGATC GGCCCTGCCC TGGCCCAACT GATGGTCTTG
TGCGCGGGCT ACTTCATCAG CCAAGACGCG AGTTCAGCAC AACAGGCCCC CGAGCCCCAG
CAGAACATGC CGGCCGATCA CTCCGTGCCC GGCAATTCGA TGCCTCCGGG ATATACGGAA
CTAAGCGTCG ATCCGGCAAT CCGGCAGCGT ATCGGAGTTA CGCTGGGAAG GGCGACGCGG
ACCCCCCTCA CCATGACCAT TCGAACGGTC GGGATCGTAC GTCCCGATGA AACCAAGCTT
GCTCATATTC ACCTCAAGAC CGAAGGCTGG GTCGAACGAC TGTTCGTCTC TTTCACCGGG
CAACAGGTGA AAGCCGGCGA AGCCATGCTT GCGATCTACA GTCCGGCCTT CTTTGCGGCC
CAGAGAGAGC TGTTGTCCGC GGCGCGGTCG GCACAATCCA ATCTCGGAGG CATGACAGAT
CAACAGCTGG TGTTGGAAGC CGCGCGTCGA CGCCTGGAGC TTTGGGATGT GCCTGCCGAT
GCGATCAAGG CCCTGGAGGC GACCGGGCGG CCCGGGACGT CGTTGGTACT ACGCAGTCCA
ATCTCAGGTA CCGTCCTGGA GAAGAAGGTC TTTCAAGGTC AATACACGAT GCCGCAGAAC
GAACTGTTCG TCGTCGCCGA CCTCTCGACG GTGTGGGTTC AGGGCAAGGT CTTCGAGTAT
GAATTGCCGC ACGTCCAGAT CGGCATGGCT GTGACTGTCG CGCTGCCCTC GTCGCCGACG
CAACAATATA CCGGCAAGGT CGTGTTCATC GATCCGGTGG TCGACGAGAT GACCCGATCG
GTGCAAGTCC GCGTCGAGCT ACCAAATCCC GACGGCCGAC TGAAGCCAGG CATGTTCAGT
CAGATCTTGA TCAGCCACGC GATGGGAAGC GGCTTGACCG TTCCGGTATC GGCCGTCATC
CGCACCGGCG AACGCAACAT CGCGTTCCGA GCTGTTGCCG ATGATCGCTT TCTCCCGGTC
CAAGTGAAAA TCAGCCCGCT GCGGTTCGAG GATCGATTCC AGATCCTGGA GGGGCTGGAG
GATGGCGACA TGGTTGCCAC TTCCGCCAAC TTCTTGATCG ATTCCGAAAG CCAGCTACTG
GCCGGCGGCG GTGGTATGGC CGGCATGCCC GGGATGGACG ACGGCAGCAA GGCCAACGAG
AACAAACCGG CAGCCCGGCC GCAGGACGTC AAGGGGATGT CGATGCCAAA TCGACCTGCC
GCAGACGATC ATTCCACCAT GAAACACGAT CGTCCGTGA
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| Protein sequence | MSTKRYRKSI GPALAQLMVL CAGYFISQDA SSAQQAPEPQ QNMPADHSVP GNSMPPGYTE
LSVDPAIRQR IGVTLGRATR TPLTMTIRTV GIVRPDETKL AHIHLKTEGW VERLFVSFTG
QQVKAGEAML AIYSPAFFAA QRELLSAARS AQSNLGGMTD QQLVLEAARR RLELWDVPAD
AIKALEATGR PGTSLVLRSP ISGTVLEKKV FQGQYTMPQN ELFVVADLST VWVQGKVFEY
ELPHVQIGMA VTVALPSSPT QQYTGKVVFI DPVVDEMTRS VQVRVELPNP DGRLKPGMFS
QILISHAMGS GLTVPVSAVI RTGERNIAFR AVADDRFLPV QVKISPLRFE DRFQILEGLE
DGDMVATSAN FLIDSESQLL AGGGGMAGMP GMDDGSKANE NKPAARPQDV KGMSMPNRPA
ADDHSTMKHD RP
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