Gene Rpal_1008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1008 
Symbol 
ID6408663 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp1071230 
End bp1072321 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content69% 
IMG OID642710922 
ProductSel1 domain protein repeat-containing protein 
Protein accessionYP_001990040 
Protein GI192289435 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCGC TGCGCGCGTT CGCGATTGTT GCGGCTTCAC TGCTGCTTGC CACCGGCGCG 
GCGGCGCAAG TTTCGCTGTC GCCGCCGTCT GGCCCCAACC CATTCCCGAA GCCGCTGGAG 
CCGGAAAAGC CGAAGCCCAG GCCGCCGGCC CCGGCCAAGG CACCCGCCAC CGAGGCGAAG 
GACAAGGCCA AGAAGCCGGG AGACAAACCC GACGCCAAGG CCGCCCCCGA GGGCGGCGCG 
GCCGCGGCCG AAGACCCCAA CGTCGACCTG GTGTACGGCG CCTATCAGCG CGGCTTCTAC 
AAGACCGCGT TCGAACTGGC GCAGAAGCGC GCCGCCGACA ACGACGCCAA GGCCATGACC 
ATGCTGGGCG AGCTCTATGC CAATGCCCTC GGCGTGAAGC GCGACTACAA GAAGGCGGCG 
GAGTGGTACT CGCGAGCGGC CGATCTCGGC GACCGCGAGG CGATGTTTGC CCTCGCCATG 
GCCCGGATGG GCGGCCGCGG CGGCCCGCCG AACCGCGAGG AAGCCGCCAA ATGGCTGGCG 
CAGGCTGCCA AGCTTGGCGA GCCGAAGGCA GCCTATAATC TGGCGCTGCT CTATCTCGAC 
GGCCAGACCT TCCCGCAGGA CGTCAAGCGC GCTGCCGAAC TGCTGCGGAT GGCCGCCGAT 
GCCGGCAACC CGGAAGCCCA ATACGCGCTG GCGACCTTCT ACAAGGAAGG TACCGGGGTA 
ACCAAGAGCA TCGAGCAGTC GGTGCGGCTG CTGCAGGCCG CCGCACTGGC CGGCAACGTC 
CCAGCCCAGG TCGAATACGC CATCGCGCTG TACAACGGTA CCGGCACCCC GAAGAACGAG 
CCGGCCGCCG TCGCGCTGCT GCGCAAGGCG GCGCGCGCCA ACAACCCGAT CGCCCAGAAC 
CGCCTCGCCC ATGTGTTGGT CTCCGGCCAG GGCGCGCCGC GCGACATCAA CGAGGCGATG 
AAATGGCACC TGATCGCCAA GACCGCCGGC AAGGGCGATC TGCAGCTCGA CCAGACGCTG 
GCCCAGATGT CGGCCGAGGA TCGCGCCAAG GCCGAAGAGG CGGCGCGCAC CTGGATTGGC 
GGCGGCAAAT GA
 
Protein sequence
MKALRAFAIV AASLLLATGA AAQVSLSPPS GPNPFPKPLE PEKPKPRPPA PAKAPATEAK 
DKAKKPGDKP DAKAAPEGGA AAAEDPNVDL VYGAYQRGFY KTAFELAQKR AADNDAKAMT 
MLGELYANAL GVKRDYKKAA EWYSRAADLG DREAMFALAM ARMGGRGGPP NREEAAKWLA 
QAAKLGEPKA AYNLALLYLD GQTFPQDVKR AAELLRMAAD AGNPEAQYAL ATFYKEGTGV 
TKSIEQSVRL LQAAALAGNV PAQVEYAIAL YNGTGTPKNE PAAVALLRKA ARANNPIAQN 
RLAHVLVSGQ GAPRDINEAM KWHLIAKTAG KGDLQLDQTL AQMSAEDRAK AEEAARTWIG 
GGK