| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0589 |
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| Symbol | |
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| ID | 6408239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 641554 |
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| End bp | 642447 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710502 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001989624 |
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| Protein GI | 192289019 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.580908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGA GCCCCGAACA CAAACGCACC GCGCTGGTCA CCGGCGCCAA TTCCGGCCTC
GGCAAGGCCA TCGTCACCGC GCTGGCGGCG GACGGCCTGC GTGTCGGCCT GGTGGCGCGC
GACCGCGGCC GCGGCGAGGC AGCGCTCGCC GATGTTCGCG CCGCCACCGG CAATCAAGAC
CTGCACCTGT TCGTCGCCGA TCTCGCCGAT CAGGAGTCAA TCCGGGCGCT GGCACAGGAT
GTGCGCCCGC GCTTCGACCG GCTGCATCTG CTCATCAACA ACGCCGGCAC CGCCTTCCCG
GAGCGGCGGC TGAGCCCGCA GGGGATCGAG CGCGCCTTCG CGATCAATCA CCTCGGCCCG
TTCCTGCTCA CCAATCTGTT GCTCGATCTG ATCAAAGCCA GTGCGCCGGC ACGGATCGTC
AATGTCGGTA CCCGCATCGA CGCGGCGATC GATTTCGACG ACCTCAACTG GGACAAGCGC
CCCTACGGCA TGATGAAGGG CTACGCCCAG TCCAAGCTCG GCAATCTGCA CTTCACCTTC
GAACTGGCGC GCCGGCTCGA AGGCAGCGGC GTCACCGTGA ATTGTGTGTT TCCCGGCGTA
TTCAAGTCCA ACCTCGGCGG CACCGACGGG GCGCAAGGTC TGTTCTGGAA GCTACTCGCC
AAACTCGGCG GCTGGGCGAT TCCGAAGCCG GAAAGCGCGG CGCAGCGGGT GCTGTATCTG
GCGAACGCAC CGGAGCTGGA GGGTGTCAGT GGCCAGTACT ACGCGAACCG CAAGACGATC
CCGGCCCCAG CTCAGGCGCT CGATGCGGAA GCGAACAGGC GGCTGTGGGA GATCAGCGAG
AGGATGACGG GACTGACACA GTCGCAGACC GTCGGCGACC AGGCGGCAAC TTGA
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| Protein sequence | MSTSPEHKRT ALVTGANSGL GKAIVTALAA DGLRVGLVAR DRGRGEAALA DVRAATGNQD
LHLFVADLAD QESIRALAQD VRPRFDRLHL LINNAGTAFP ERRLSPQGIE RAFAINHLGP
FLLTNLLLDL IKASAPARIV NVGTRIDAAI DFDDLNWDKR PYGMMKGYAQ SKLGNLHFTF
ELARRLEGSG VTVNCVFPGV FKSNLGGTDG AQGLFWKLLA KLGGWAIPKP ESAAQRVLYL
ANAPELEGVS GQYYANRKTI PAPAQALDAE ANRRLWEISE RMTGLTQSQT VGDQAAT
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