| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0492 |
|---|
| Symbol | |
|---|
| ID | 6408141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 530701 |
|---|
| End bp | 533982 |
|---|
| Gene Length | 3282 bp |
|---|
| Protein Length | 1093 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642710404 |
|---|
| Product | helicase domain protein |
|---|
| Protein accession | YP_001989527 |
|---|
| Protein GI | 192288922 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAATC TGTACTCTGA AGCGTTTACT GCTGACCGCG TCCCCGGCGC CGGTGTGACC
GCGGTGCTGG GCCCGACCAA CACCGGCAAG ACGCATCTGG CGATCGAGCG GATGGTCGCG
CACCCATCGG GCCTGATCGG CCTTCCGCTG CGGCTGTTGG CGCGCGAGGT CTACAACAAG
ATCGTCGACA AGGTCGGCGC CAACGCCGTC GCGCTGGTGA CCGGCGAAGA GAAGATCAAA
CCCTCCAAGC CGCGCTACTG GGTCTCGACC GTCGAGGCGA TGCCGCGCGA TCTCGACGTC
TCGTTTCTGG CCGTCGACGA AATCCAGATC GCGGCCGATC TCGAGCGCGG CCACGTCTTC
ACCGATCGCA TCCTGCGCCG GCGCGGCCGC GACGAGACGC TGCTGCTCGG CGCCGCGACG
ATGCGGCCGA TGATCGAGCG GCTGCTGCCT GGCGCCAGCA TCGTCACCCG GCCGCGGCTG
TCGCAGCTCG AATATGCCGG CGACCGCAAG CTGACCCGGC AGCCGCGCCG GACCGCGATC
GTGGCGTTCT CGGCCGACGA GGTCTATGCG ATCGCCGAGC TGATCAAGCG CCAGCATGGC
GGCGCTGCGG TGGTGCTCGG CTCGCTGAGC CCACGCACCC GCAACGCCCA GGTGGCGATG
TTTCAGTCCG GCGACGTCGA TTACCTGATC GCCACCGACG CGATCGGCAT GGGGCTCAAC
CTCGATGTCG ACCACGTCGC CTTCGCGTCC GACCGCAAAT TCGACGGCTA CCAGTTTCGC
CGCCTCACCC CGGCGGAATT CGCCCAGATC GGCGGACGCG CCGGGCGTGC CACTCGGGAC
GGCACCTTCG GTACCACCGG GCGCTGCGCG CCATTCGAGC CCGAGCTGGT CAACGCCTTG
CAAAATCACA GCTTCGAGCC GGTGAAGATG CTGCAGTGGC GCAACGCGGA GCTGGATTTC
GCCTCGATCG GCGCACTGCA AGTGTCGCTC GCCGAGTCGC CGCGGCACGA AGCGCTGACC
CGCGCGCCGG TCGCCGAGGA TCTCCGCGTG CTCGACCATG TTGCCCGCGA CGCCGAGGTG
CGCGAAATCG CGCAGGGCAA AGCCGCAGTA GAGCGGCTAT GGGATGTCTG TCAGGTCCCG
GATTACCGTA AGATCGCACC AGCAGCCCAT GCCGAGCTGG TGATCACGCT GTACCGGTTC
TTGATGCAAA AGGGGCGGAT ACCGGATAGC TGGTTCGCTG CCCAGGTCGA TCAGGCGGAT
CGCACCGACG GCGGCATCGA CACGCTTTCC GCGAGAATTG CGCAAATCCG CACCTGGACC
TTCGTCGCCA ACCGGCCGGA TTGGCTCGCC GACCCCGAAC ACTGGCAGGG CATCTCGCGC
GACGTTGAAA ATAAATTGTC AGATGCATTG CACGAACGGC TCACGGAACG TTTCGTCGAT
CGCCGGACCA GTGTATTGAT GCGCCGCCTG CGGGAAAACA CGATGTTGAA TACGGAAATT
GGCAAGACTG GTGAGGTGAT CGTCGAGGGC CACGTGATTG GCCGGCTCGA TGGCTTCACC
TTTGCGCCCG ACGCGGCCGA GGCCGGCTCG GATGCGAAGG CGTTGCAGGC GACAGCGCAA
AAGGCGCTGG CCGGCGAAAT CGACGCGCGC GCCGAAAAGT TGTCGAACGC ACCGGACGAT
CAGTTCATCC TGACCTCCGA CGGGACCATT CGCTGGACCG GCGATGCGGT CGCGCGACTG
GTCGGCTCGG ACGACGTGCT GCGGCCACGG CTGCGGATCA TCGCCGACGA CCGGCTCGCC
GGCGCCCCGC GCGAAGCGGT GCAGACCCGT CTCGATCTGT GGCTCAAGAC CCATGTCGAG
AAGATCCTCG GGCCGCTGTT CGAACTCGGC AAGGCCGAAG ATGTCAGCGG CATTGCCCGC
GGCATCGCTT TCCAGCTGAT CGAGTCGCTC GGCGTGCTGG AGCGCGCCAA GATCGCGACT
GAGATGAAGG ATCTGGACCA GCCGTCGCGC GCGACATTGC GCAAATACGG CGTGCGGTTC
GGCGCCTATC ACATCTACTT CCCGTCGCTG CTGAAGCCGG CGGCGCGGGC ACTTGCCTCG
CTGCTGTGGG CGCAGAAGCA GGACAATGTC GATCTCGCCG CGCTGTCCAG CGCGCAGCAT
CTGGCCGGCA GCGGCCGCAC CTCGTTTCCG GCCGACAAGG CGCTCGATCG CGATGCGTAT
CGCACGCTCG GCTACCGGCT GTGCGGCGAG CGCGCCGTCC GCGTCGATAT TCTCGAACGT
CTGGCCGATC TGATCCGGCC CGCGCTGGCG TGGCGCGAAG GCGCGTCCGG CGAAAAGCCG
GCTGGTGCCT TCGACGGCCG GAGCTTCGTG GTCACCCAGG CGATGACCTC GCTGACCGGT
TCGGCCGGCG AAGACTTTGC GTCGATCTTG AAGGCGCTCG GCTACCGGAT GGAGCGGCGC
CCGGCACCGC CGCCCGCGCC GAAGGCTGCC GAGACCGCTT CCCCCGCTAC GGAAGAGGCT
GCAGCCACCA GCGACATGTC GGCCGAAGAC CAGGCGATTC TGGCCGGGGC GATTGCGTTC
GAACCGTCTC CGACAGCCGA AGGCGATGTT GCCGAAGCTG CGCCGACCGT TGACGAGCAG
CCTGCCGCCG ACGAGCCTGC TGCTGTCGAT CAGCCCGTAG CTACCGCAGC CGAACCGGCC
GCAGAGGCCG CCGCCGCCGA AACCGCGGAG CAGCCTGCCG CTGACGCGAG CGAAGCCCCC
GCGAGCGAAG TGACGACAGC CGAAGCCTCG TCCGAAGCTG CCAGCGCAGA AGCTGCGCCG
GCTGCCAAGG CGGAGCCGGA GCTGGTCGAA GTCTGGCGTC CGGGTGGCCG TTCCGACGAG
CATCGGCCGC GTCACGATCG TAATCGCCAT CGCAATCGTC CGCAGCACGG CGCTCCCGCC
GGTGCGAACG AAAGCGAGAG CGCCGAAGCC AAGAGCGACC GCGGTGGCGG TCGCCGCGGC
AAGGGCGAGT TTCGTCGCGA TCGCCGCGAT CAGGAAGGCG AAGGCGTGCG CCGCGAGGCC
TCTGCTGAAG GGCGCCCGCC GCGCGAGCGC TTCAAGGGCC GCGACAAATT CCAGGACAAG
CATCAGGGCG GGAAGGGCGG CCGCGACAAT CAGGGCGGCG GCTCGCACCG GCAGGTGCAT
TCCAGCGCCC CGCGCGAGCG TGACCGACCG ATGGATCCGA ATTCGCCGTT CGCCAAGCTC
GCCGCGCTGA AGGAGCAACT CACCGCCGGC CGCAAGGACT AA
|
|---|
| Protein sequence | MPNLYSEAFT ADRVPGAGVT AVLGPTNTGK THLAIERMVA HPSGLIGLPL RLLAREVYNK
IVDKVGANAV ALVTGEEKIK PSKPRYWVST VEAMPRDLDV SFLAVDEIQI AADLERGHVF
TDRILRRRGR DETLLLGAAT MRPMIERLLP GASIVTRPRL SQLEYAGDRK LTRQPRRTAI
VAFSADEVYA IAELIKRQHG GAAVVLGSLS PRTRNAQVAM FQSGDVDYLI ATDAIGMGLN
LDVDHVAFAS DRKFDGYQFR RLTPAEFAQI GGRAGRATRD GTFGTTGRCA PFEPELVNAL
QNHSFEPVKM LQWRNAELDF ASIGALQVSL AESPRHEALT RAPVAEDLRV LDHVARDAEV
REIAQGKAAV ERLWDVCQVP DYRKIAPAAH AELVITLYRF LMQKGRIPDS WFAAQVDQAD
RTDGGIDTLS ARIAQIRTWT FVANRPDWLA DPEHWQGISR DVENKLSDAL HERLTERFVD
RRTSVLMRRL RENTMLNTEI GKTGEVIVEG HVIGRLDGFT FAPDAAEAGS DAKALQATAQ
KALAGEIDAR AEKLSNAPDD QFILTSDGTI RWTGDAVARL VGSDDVLRPR LRIIADDRLA
GAPREAVQTR LDLWLKTHVE KILGPLFELG KAEDVSGIAR GIAFQLIESL GVLERAKIAT
EMKDLDQPSR ATLRKYGVRF GAYHIYFPSL LKPAARALAS LLWAQKQDNV DLAALSSAQH
LAGSGRTSFP ADKALDRDAY RTLGYRLCGE RAVRVDILER LADLIRPALA WREGASGEKP
AGAFDGRSFV VTQAMTSLTG SAGEDFASIL KALGYRMERR PAPPPAPKAA ETASPATEEA
AATSDMSAED QAILAGAIAF EPSPTAEGDV AEAAPTVDEQ PAADEPAAVD QPVATAAEPA
AEAAAAETAE QPAADASEAP ASEVTTAEAS SEAASAEAAP AAKAEPELVE VWRPGGRSDE
HRPRHDRNRH RNRPQHGAPA GANESESAEA KSDRGGGRRG KGEFRRDRRD QEGEGVRREA
SAEGRPPRER FKGRDKFQDK HQGGKGGRDN QGGGSHRQVH SSAPRERDRP MDPNSPFAKL
AALKEQLTAG RKD
|
|---|
| |