Gene Rpal_0234 details

Gene Information

• Locus tag: Rpal_0234
• Symbol: leuD
• ID: 6407878
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 254159
• End bp: 254764
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 642710142
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_001989270
• Protein GI: 192288665
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACAAGT TCACCACGCT GGAAGGCGTC GCTGCGCCGC TGAAGATCAT CAATGTCGAC 
ACCGACATGA TCATTCCCAA GCAGTATCTG AAGACCATCA AGCGCACCGG TCTCGGCAAG 
GGCCTGTTCT CGGAGCAGCG CTACAAGGAC GACGGCAGCG AGAACCCGGA TTTCATCCTC 
AACAAGCCGG CCTATCGCGG TGCCAAGATC CTGGTCGCCG GCGACAATTT CGGCTGCGGC 
TCGAGCCGTG AGCATGCCCC GTGGGCGCTG CTCGATTTCG GCATCCGCTG CGTGATCTCG 
ACCTCGTTCG GCGACATTTT CTACAACAAC TGCTTCAAGA ACGGCGTGCT GCCGATCCGG 
GTGTCGCAGG CCGATCTCGA CAAGCTGTTC GACGACGCAG AGCGCGGCTC CAATGCCACG 
ATGACGATCG ACCTGCAGGC GCAGGAAATC CGCGGTCCCG ACGGCGGCGC GATCAAGTTC 
GAGATCGACC CGTTCCGCAA GCACTGCCTG ATCAACGGTC TCGACGACAT CGGCCTGACG 
CTGGAAAAGA AGCCGTCGAT CGACGCCTAC GAGACTAAGC TGAAGACCGA GCGCGCCTGG 
GCGTAA 

 

Protein sequence

MDKFTTLEGV AAPLKIINVD TDMIIPKQYL KTIKRTGLGK GLFSEQRYKD DGSENPDFIL 
NKPAYRGAKI LVAGDNFGCG SSREHAPWAL LDFGIRCVIS TSFGDIFYNN CFKNGVLPIR 
VSQADLDKLF DDAERGSNAT MTIDLQAQEI RGPDGGAIKF EIDPFRKHCL INGLDDIGLT 
LEKKPSIDAY ETKLKTERAW A