| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0112 |
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| Symbol | |
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| ID | 6407755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 123664 |
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| End bp | 125412 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710021 |
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| Product | thiamine pyrophosphate domain protein TPP-binding |
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| Protein accession | YP_001989150 |
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| Protein GI | 192288545 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.246122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCAG CGACTTCGTC GGCCGGCGAC TGGCTCGAGG GCGGCGAACT GCTCGCCCGC
ACACTTCGTG ACGCCGGCGT CGACACCGTG TTCGCCCTGC ACGGCGGTCA TCTCGAATCC
TTCTATCGTG GCTGCATCGC CAACGACATC CGGCTGGTCG ATTTCCGCCA CGAATCCTCG
GCCGGCCACG CCGCCGACGG CTATGCGCGC GCCACCGGCA AGCTCGGCGT CTGCGTGATC
ACCGCCGGGC CGGGCTTCAC CAATGGCGTC ACGGCGATTC TCAACGCGCA GCTCGACAGC
ATCCCGACGT TGTTCATCGT CGGCTCGCCG CCGCTGCGCG AGGCCGAGAC CAATGCGCTG
CAGGGCGGCG TCGATCAGAT CGCCGTCACG CTGCCGATGG TGAAGTATGC GCATCGCATC
ACCAACACCG AACGCATTCC GGACCTTACC GCGTTGGCGA TCCGCAAGGC CACGACGGGT
CGCCGCGGCG CGGTGCTGCT CGATGTGCCG ATCGACGTGC TGCACATGCG CGCCCACAAG
GACGACGTCC GTCCGGCGCA CGGCCTCAAT ATAAATCCGC GTCCGGCGCC GCATCCGGAC
GAGATTAAGG CTGCCATCGC GATCCTGAAG GCGAGCGAGC GGCCGGTGAT CGTGGTTGGC
GGTGAGGCGC GCTATTCGAA TTGCCGCGAC GACCTCGTCG CGCTAGCCGA GGCCACGCAG
ATTCCGGTGG TGTCGAACAC CCGGGGCATG GGCGTGTTTC CGAGCAGCCA TCCGCTGAAC
GGTCAGGTGG TCGGCAATCT GGCACTGCTG TCGGCGCGGC GGCCGGACGC CGCGCTGCTA
CTCGGTACGC GATTCGGCTT CCGCCTCGCC GGCCGCAGCA CCGCGTTCTT TCCCGACGAT
GCCAAGTTGA TTCAGGTGCA CAGCGACGCC GCCGAGCTCG GCCGGCTGCG CCATGTCGAA
CTGCCGATCG TCGCCGATGT CGGCGCCGCG CTAACCACGC TGCGTACCGC CGCCGCGGCC
GAAACATGGC CGCAGCGTCC GGCCTGGATC GAGGCGGTGA CCAAGGCACC CGCCAAGATG
CTCGACATGT TTCCGAACAA GCAAGGACCA AAAGGCATCC ATCCGTTCTG GGCCGCGGAA
GCCGCGGTCC GGGCGGCAGG GCCGGACGCC GCGATCGTGC TCGACGGCGG CGAGGCGGCG
AGCTGGGCCG CGTTCCATCT CCGCTCCAAT CAGCCGGGCC ACGTCCAGGG CGTCGGCTAT
CTCGGCTGCC TCGGCACCGG GCCGGGCCAG TCGATCGGAG CGCAGTTGGT CGATCCGGAC
AAACGGGTAA TGCAGATCAC CGGCGACGGC GCGATGGGTT TCCACATCCA GGAGTTCGAT
ACGATGAGCC GGCATCGTCT GCCGATCTGT ACCATCGTGC TCAACAACGA GATCTGGGGC
ATGTCGATCC ACGGCCAGCA GATCATGTAC GGCGCCAATT ATAGCGCGAT CAGCGAGCTA
CGCGGCACCA ACTACGCCAG CGTCGCGGCG GCGTTCGGGT GCCACGCCGA GCGCGTCACC
GAATTCGACG AGATCGAGCC TGCGATCGCT CGTGCCTATG CGTCGGGCCA GCCATCCTGC
ATCGAGATCA TGATCGATCC GGACGTCGTG CATCCGGTCA CCGTCGCGGC GCTCGGCACG
ATCAGCGACG AGAAGCGCGA GATCATGATC CCCTACTACG AGAACATCCC GATCCGTCCG
CAGGCGTGA
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| Protein sequence | MSAATSSAGD WLEGGELLAR TLRDAGVDTV FALHGGHLES FYRGCIANDI RLVDFRHESS
AGHAADGYAR ATGKLGVCVI TAGPGFTNGV TAILNAQLDS IPTLFIVGSP PLREAETNAL
QGGVDQIAVT LPMVKYAHRI TNTERIPDLT ALAIRKATTG RRGAVLLDVP IDVLHMRAHK
DDVRPAHGLN INPRPAPHPD EIKAAIAILK ASERPVIVVG GEARYSNCRD DLVALAEATQ
IPVVSNTRGM GVFPSSHPLN GQVVGNLALL SARRPDAALL LGTRFGFRLA GRSTAFFPDD
AKLIQVHSDA AELGRLRHVE LPIVADVGAA LTTLRTAAAA ETWPQRPAWI EAVTKAPAKM
LDMFPNKQGP KGIHPFWAAE AAVRAAGPDA AIVLDGGEAA SWAAFHLRSN QPGHVQGVGY
LGCLGTGPGQ SIGAQLVDPD KRVMQITGDG AMGFHIQEFD TMSRHRLPIC TIVLNNEIWG
MSIHGQQIMY GANYSAISEL RGTNYASVAA AFGCHAERVT EFDEIEPAIA RAYASGQPSC
IEIMIDPDVV HPVTVAALGT ISDEKREIMI PYYENIPIRP QA
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