Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0099 |
Symbol | |
ID | 6407742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 106242 |
End bp | 107468 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642710008 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001989137 |
Protein GI | 192288532 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACCCGCC TGTTTCACGC GAACCTCTGT CCCACTCGCG CGAAGACGCT GCACTTCCTG CCGTCCGTCC GGAGCCTGTT CATGTCGCCT GTTGTTCGCC GCCCCGCGCT CGCCCTCGTC GCGCTGCTCG CCGCCTCTCC TGCTTTGGCT CAGATGCCGG GCGGCGGGCC GCCGGCGGTC GGCACGATCA CCGCCAGGCC GCAGGCGATC ACCGAGACCA CCGAGATCAA CGGCCGGATT CAGGCGATCG GACGCGTCGA TCTCACCGCG CGCGTCAACG CCTATCTGCA GGAGCAGCTG TTCGTCGAAG GCGCCGAGGT GAAGAAGGGC GATCTGCTGT TCCGGCTGGA GCAACCGCCG TTCGAGGCCG ATGCCGAGGC CAAGCGCGCC GCGGTCGATC AGGCCCAGGC CCAGCTCGAC TACGCCGATC TGGCGCTCGG CCGCGCCGAG CAATTATTGA AGACCAGTTC CGGCAGCCAG AGCACCGCCG ACAACGCCCG CGCGGCGCAG CGCACCGCCG CGGCGCAGCT CCGCTCGGCG CAGGCGCAAT TGCGCCAGTC CGAGATCAAT CTCGGTTACA CCGAAATCCG CTCGCCGATC GACGGCCGGA TCGGCCGCAT CCAGGTGACG CTCGGCAATG TGGTCGGACC GTCGTCCGGT GCGCTCGCCA CGGTGGTCAG CCAGGATCCC GCTTACGTCG TGTTCCCGAT CTCGGTGAAC CGGCTGCTGC AACTGCGCGA GGAATTCGCC GCGCAGGGCG GGCTCGAGGC GATGAAGATC AGGCTGCGAC TGCCCGACGG CCGGCTGTAC CGCGAGGTCG GCAAGCTGCA GTTCGTCGAC GTCGCCGTCG CGCGCGACAC CGACAGCATC ATCCTGCGCG GCACCATCGC CAATCCGCCG CTCGCCGGCG GCGGCCGCGA ACTGACCCAC GATGAGATGG TCCGTGTGCT TCTCGAAGGC TCCAAGCCGC GCGAGGTGCT GGCGATCCCG CGAGCCGCGA TCCTGACCGA CCAGCAGGGC GACTACGTCT ACGTGGTCAG CGACAAGAAC GTCGCCGAGC GGCGCCGGGT CAAGCTCGGA CAATCCACCG CGCAGATCGC CTCGGTGATC GACGGGCTGA AGGCCGGCGA CCAGGTGATC GTCGAGGGCG TGCAGCGGGC GCGCCCGAAT GCACCCGTGA CACCGACGCC CGCCGCCGCC ACGACCGCCC TGCCGACCCC GAGATAA
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Protein sequence | MTRLFHANLC PTRAKTLHFL PSVRSLFMSP VVRRPALALV ALLAASPALA QMPGGGPPAV GTITARPQAI TETTEINGRI QAIGRVDLTA RVNAYLQEQL FVEGAEVKKG DLLFRLEQPP FEADAEAKRA AVDQAQAQLD YADLALGRAE QLLKTSSGSQ STADNARAAQ RTAAAQLRSA QAQLRQSEIN LGYTEIRSPI DGRIGRIQVT LGNVVGPSSG ALATVVSQDP AYVVFPISVN RLLQLREEFA AQGGLEAMKI RLRLPDGRLY REVGKLQFVD VAVARDTDSI ILRGTIANPP LAGGGRELTH DEMVRVLLEG SKPREVLAIP RAAILTDQQG DYVYVVSDKN VAERRRVKLG QSTAQIASVI DGLKAGDQVI VEGVQRARPN APVTPTPAAA TTALPTPR
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