Gene RoseRS_4224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_4224 
Symbol 
ID5211209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp5289867 
End bp5292332 
Gene Length2466 bp 
Protein Length821 aa 
Translation table11 
GC content59% 
IMG OID640597813 
Producthypothetical protein 
Protein accessionYP_001278517 
Protein GI148658312 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.965892 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTCG TTCACGTCCA CTCCTGGCGC AGGTATGTCG GGCTGGCGCT GGTAACAGCA 
AGCATACTGG CGTTGCAGAT CACGTTCACC CGCGTGTTTT CGATCATGAT CTGGCACCAT
TTCACCTACC TGATCATTGG TGTAGCGCTC CTGGGTGGCG GCGCATCCGG CACATTTCTG
GCAGTGCGCG GCTGGAGCGC TGCAACGCTC GAACGTCGAT TGGGCAGGCT TGTCATTGGG
TATAGCCTGA TGGTCCTGCT CAACCTGGCG ATCATCGGCG GCATCGCTAT CGATCCGCTG
CGGGGCAGTC AGATTGTTCA AACCCTCATC GGGCTGGCAA TCTACTTTGT CGGGCTGTTC
ACGACCTTTT TTCTCGGCGG TGTGATCGTT TCCGGCGTTT TCACCATCTG GCACAAAGAA
GCGCACCGCC TCTACTTCGC CGATATGCTC GGCGCAGGCG CGGCGACGCT GGCAGTGGTG
TGGGTGATCC AGGCGATTGG CGGTCCCGCG ACGATTGCAG CAACGGCGCT GCTCACGCTG
GCAGGCAGTC TTCTGTTCGG CGTCGGTCTC ACGCGCCCCT GGCGCATCGG CGCAGCGGCG
CTCGGCGTCG GGCAGGGCGG GCTGATCCTG TGGTTGATCC TCGGTTCGCC GCTGCACCTG
CCGGTTCCGG GATCGAAGGA ACTCGGATGG GCGCAGCAAC ACTTCGACGC TCGCCCGGAG
TACACCCGCT GGAATCCGGT CGGGCGCGTG GATGTGCTGC CGACCATTCA GGTCAAAGAA
CCGATGATCG TTGGCGGCAT CAGCCGGGTC TATCTGGAGA GCGACGCATT TCAGCAGGCG
CCATTGTACG ACCTGAAACT GGTCACGCTT GATGGGACCT CAATGACCGG CATGTACCGT
TTTGATGGAA CCGACCAGGA TCTGCAACGC TTTCGCTTTC TCGACCACGC CATCATCAGC
GCGCCGTACC ATCTGGGGCT GAAACACGAC ACAACGCTGA AGATCGGTGT TGGGGGCGGG
CTTGACATTC TGCTGGCGCG ATTGTACGGC GCCAGGCAGA TCACCGCTAT CGAACTGAAC
GCCGATGTCG TGAAGTTGCT GGAAGGACCC TACCGCGAGT TCAGCGGCAA TCTCGCAGGG
CACCCCTCGA CACGCATCAT CGTTGCAGAA GGACGGAGTT TCCTGACCCG CGATACCAGC
ACCTATGACC TCATTCAGGG GATCGGTCTC GATAATCTGG TTGCTCTTTC GGGTGGTGCG
TATGTGCTTT CGGAGTCGTA CCTCTATACT GTCGACTCGT TTGCTTTGGT GCTGAACCGG
CTCAACCCGG AAGGGGTGTT TGCCTGGACA CGCAACGTCG ATCAGCCGCC GCGCGAAATG
CTGCGGATCA CCGGTCTGGC TGCGGAGGCG TTGCGACAGC GCGGCGTCGC CGATCCTGCG
GCGCACATTG CAATTGTTGC GAACGACACC AACACCCAGG CGACGCTGCT GGTCTCGCCG
TCTCCGTTTT CGCCGCAGGC GATTGAGCGA CTGCGGGCAT GGGCGCGCAC CAATGCGTTC
ATCATGCTGC ACGATCCACT GGAACGTCTC GACACCACCT ATGCAGCATA CCTGCATGCG
CCCGATCCGC GCGCTTTTGA AGCAGCGTAT CAGTTCAACA TCTTTCCGGT GACAGACGAC
AATCCGTTCT TTTACAACTA CTTCAGATGG GATCATGTCG CCTTCAATCA GGCATTCAGC
GGCAAGATCA ACCGTTTTCC GATCGGCAAT CTCATTCTGA TCACCATGGC TGGCTTTTCG
CTGGCAAGCG CGGCTATTTT TATCATTGCA CCTCTCTGGC GCCACAACCG GCGGGGTCTG
CAACTGCCGC TGGCACGCCC GATGCTGGTG TATTTCAGTG CGCTGGGAGT CGGCTACATT
TTTGTGCAGA TTGTGCTGAT CCAGCGTTTC ACCCTGTTCA TCGGCTATCC TACCAGCGCC
ATTACAACGA CGATTTTCAG TATGCTGATC TTCTCTGCGG CAGGAAGCCT GCTCAGCCGC
CGCCTGATCG ATAGCGCGGC GCGGTTGCGC GCGGTGTTGA TCGGTGTGGC GGTTGCAATC
GGCATCTACA TTGTGACGTT GCCGTCACTC TTTCAATCGT TCCTGCACCT GTCGGATGGT
GTGCGCGTGG CGTTGAGCGT TCTGATGATC GCGCCGCTGG CGTTGATCAT GGGGATGCCG
TTCCCCACGG GACTGCGACA GCTTGGTATG CACGGCGCAA CCCTGGTGCC ATGGGCATGG
GGGATGAACG GCGTGTTCTC GGTGGTTGGC TCAACCCTGG TGATTATTAT CAGCATGGCG
AGCACATTTA CGGTAGCAAT GGCGTGCGCA GCACTGTTCT ATGCGATATC AGCATTCGTT
GCCGCCGGTC TCTACCGGCG CGAGGCGGTT CAGACGGCGG CGGCGGTCAA TATGTCACCT
CTGTAA
 
Protein sequence
MAVVHVHSWR RYVGLALVTA SILALQITFT RVFSIMIWHH FTYLIIGVAL LGGGASGTFL 
AVRGWSAATL ERRLGRLVIG YSLMVLLNLA IIGGIAIDPL RGSQIVQTLI GLAIYFVGLF
TTFFLGGVIV SGVFTIWHKE AHRLYFADML GAGAATLAVV WVIQAIGGPA TIAATALLTL
AGSLLFGVGL TRPWRIGAAA LGVGQGGLIL WLILGSPLHL PVPGSKELGW AQQHFDARPE
YTRWNPVGRV DVLPTIQVKE PMIVGGISRV YLESDAFQQA PLYDLKLVTL DGTSMTGMYR
FDGTDQDLQR FRFLDHAIIS APYHLGLKHD TTLKIGVGGG LDILLARLYG ARQITAIELN
ADVVKLLEGP YREFSGNLAG HPSTRIIVAE GRSFLTRDTS TYDLIQGIGL DNLVALSGGA
YVLSESYLYT VDSFALVLNR LNPEGVFAWT RNVDQPPREM LRITGLAAEA LRQRGVADPA
AHIAIVANDT NTQATLLVSP SPFSPQAIER LRAWARTNAF IMLHDPLERL DTTYAAYLHA
PDPRAFEAAY QFNIFPVTDD NPFFYNYFRW DHVAFNQAFS GKINRFPIGN LILITMAGFS
LASAAIFIIA PLWRHNRRGL QLPLARPMLV YFSALGVGYI FVQIVLIQRF TLFIGYPTSA
ITTTIFSMLI FSAAGSLLSR RLIDSAARLR AVLIGVAVAI GIYIVTLPSL FQSFLHLSDG
VRVALSVLMI APLALIMGMP FPTGLRQLGM HGATLVPWAW GMNGVFSVVG STLVIIISMA
STFTVAMACA ALFYAISAFV AAGLYRREAV QTAAAVNMSP L