| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4224 |
|---|
| Symbol | |
|---|
| ID | 5211209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 5289867 |
|---|
| End bp | 5292332 |
|---|
| Gene Length | 2466 bp |
|---|
| Protein Length | 821 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640597813 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001278517 |
|---|
| Protein GI | 148658312 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.965892 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTCG TTCACGTCCA CTCCTGGCGC AGGTATGTCG GGCTGGCGCT GGTAACAGCA
AGCATACTGG CGTTGCAGAT CACGTTCACC CGCGTGTTTT CGATCATGAT CTGGCACCAT
TTCACCTACC TGATCATTGG TGTAGCGCTC CTGGGTGGCG GCGCATCCGG CACATTTCTG
GCAGTGCGCG GCTGGAGCGC TGCAACGCTC GAACGTCGAT TGGGCAGGCT TGTCATTGGG
TATAGCCTGA TGGTCCTGCT CAACCTGGCG ATCATCGGCG GCATCGCTAT CGATCCGCTG
CGGGGCAGTC AGATTGTTCA AACCCTCATC GGGCTGGCAA TCTACTTTGT CGGGCTGTTC
ACGACCTTTT TTCTCGGCGG TGTGATCGTT TCCGGCGTTT TCACCATCTG GCACAAAGAA
GCGCACCGCC TCTACTTCGC CGATATGCTC GGCGCAGGCG CGGCGACGCT GGCAGTGGTG
TGGGTGATCC AGGCGATTGG CGGTCCCGCG ACGATTGCAG CAACGGCGCT GCTCACGCTG
GCAGGCAGTC TTCTGTTCGG CGTCGGTCTC ACGCGCCCCT GGCGCATCGG CGCAGCGGCG
CTCGGCGTCG GGCAGGGCGG GCTGATCCTG TGGTTGATCC TCGGTTCGCC GCTGCACCTG
CCGGTTCCGG GATCGAAGGA ACTCGGATGG GCGCAGCAAC ACTTCGACGC TCGCCCGGAG
TACACCCGCT GGAATCCGGT CGGGCGCGTG GATGTGCTGC CGACCATTCA GGTCAAAGAA
CCGATGATCG TTGGCGGCAT CAGCCGGGTC TATCTGGAGA GCGACGCATT TCAGCAGGCG
CCATTGTACG ACCTGAAACT GGTCACGCTT GATGGGACCT CAATGACCGG CATGTACCGT
TTTGATGGAA CCGACCAGGA TCTGCAACGC TTTCGCTTTC TCGACCACGC CATCATCAGC
GCGCCGTACC ATCTGGGGCT GAAACACGAC ACAACGCTGA AGATCGGTGT TGGGGGCGGG
CTTGACATTC TGCTGGCGCG ATTGTACGGC GCCAGGCAGA TCACCGCTAT CGAACTGAAC
GCCGATGTCG TGAAGTTGCT GGAAGGACCC TACCGCGAGT TCAGCGGCAA TCTCGCAGGG
CACCCCTCGA CACGCATCAT CGTTGCAGAA GGACGGAGTT TCCTGACCCG CGATACCAGC
ACCTATGACC TCATTCAGGG GATCGGTCTC GATAATCTGG TTGCTCTTTC GGGTGGTGCG
TATGTGCTTT CGGAGTCGTA CCTCTATACT GTCGACTCGT TTGCTTTGGT GCTGAACCGG
CTCAACCCGG AAGGGGTGTT TGCCTGGACA CGCAACGTCG ATCAGCCGCC GCGCGAAATG
CTGCGGATCA CCGGTCTGGC TGCGGAGGCG TTGCGACAGC GCGGCGTCGC CGATCCTGCG
GCGCACATTG CAATTGTTGC GAACGACACC AACACCCAGG CGACGCTGCT GGTCTCGCCG
TCTCCGTTTT CGCCGCAGGC GATTGAGCGA CTGCGGGCAT GGGCGCGCAC CAATGCGTTC
ATCATGCTGC ACGATCCACT GGAACGTCTC GACACCACCT ATGCAGCATA CCTGCATGCG
CCCGATCCGC GCGCTTTTGA AGCAGCGTAT CAGTTCAACA TCTTTCCGGT GACAGACGAC
AATCCGTTCT TTTACAACTA CTTCAGATGG GATCATGTCG CCTTCAATCA GGCATTCAGC
GGCAAGATCA ACCGTTTTCC GATCGGCAAT CTCATTCTGA TCACCATGGC TGGCTTTTCG
CTGGCAAGCG CGGCTATTTT TATCATTGCA CCTCTCTGGC GCCACAACCG GCGGGGTCTG
CAACTGCCGC TGGCACGCCC GATGCTGGTG TATTTCAGTG CGCTGGGAGT CGGCTACATT
TTTGTGCAGA TTGTGCTGAT CCAGCGTTTC ACCCTGTTCA TCGGCTATCC TACCAGCGCC
ATTACAACGA CGATTTTCAG TATGCTGATC TTCTCTGCGG CAGGAAGCCT GCTCAGCCGC
CGCCTGATCG ATAGCGCGGC GCGGTTGCGC GCGGTGTTGA TCGGTGTGGC GGTTGCAATC
GGCATCTACA TTGTGACGTT GCCGTCACTC TTTCAATCGT TCCTGCACCT GTCGGATGGT
GTGCGCGTGG CGTTGAGCGT TCTGATGATC GCGCCGCTGG CGTTGATCAT GGGGATGCCG
TTCCCCACGG GACTGCGACA GCTTGGTATG CACGGCGCAA CCCTGGTGCC ATGGGCATGG
GGGATGAACG GCGTGTTCTC GGTGGTTGGC TCAACCCTGG TGATTATTAT CAGCATGGCG
AGCACATTTA CGGTAGCAAT GGCGTGCGCA GCACTGTTCT ATGCGATATC AGCATTCGTT
GCCGCCGGTC TCTACCGGCG CGAGGCGGTT CAGACGGCGG CGGCGGTCAA TATGTCACCT
CTGTAA
|
|---|
| Protein sequence | MAVVHVHSWR RYVGLALVTA SILALQITFT RVFSIMIWHH FTYLIIGVAL LGGGASGTFL
AVRGWSAATL ERRLGRLVIG YSLMVLLNLA IIGGIAIDPL RGSQIVQTLI GLAIYFVGLF
TTFFLGGVIV SGVFTIWHKE AHRLYFADML GAGAATLAVV WVIQAIGGPA TIAATALLTL
AGSLLFGVGL TRPWRIGAAA LGVGQGGLIL WLILGSPLHL PVPGSKELGW AQQHFDARPE
YTRWNPVGRV DVLPTIQVKE PMIVGGISRV YLESDAFQQA PLYDLKLVTL DGTSMTGMYR
FDGTDQDLQR FRFLDHAIIS APYHLGLKHD TTLKIGVGGG LDILLARLYG ARQITAIELN
ADVVKLLEGP YREFSGNLAG HPSTRIIVAE GRSFLTRDTS TYDLIQGIGL DNLVALSGGA
YVLSESYLYT VDSFALVLNR LNPEGVFAWT RNVDQPPREM LRITGLAAEA LRQRGVADPA
AHIAIVANDT NTQATLLVSP SPFSPQAIER LRAWARTNAF IMLHDPLERL DTTYAAYLHA
PDPRAFEAAY QFNIFPVTDD NPFFYNYFRW DHVAFNQAFS GKINRFPIGN LILITMAGFS
LASAAIFIIA PLWRHNRRGL QLPLARPMLV YFSALGVGYI FVQIVLIQRF TLFIGYPTSA
ITTTIFSMLI FSAAGSLLSR RLIDSAARLR AVLIGVAVAI GIYIVTLPSL FQSFLHLSDG
VRVALSVLMI APLALIMGMP FPTGLRQLGM HGATLVPWAW GMNGVFSVVG STLVIIISMA
STFTVAMACA ALFYAISAFV AAGLYRREAV QTAAAVNMSP L
|
|---|
| |