Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_4224 |
Symbol | |
ID | 5211209 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 5289867 |
End bp | 5292332 |
Gene Length | 2466 bp |
Protein Length | 821 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640597813 |
Product | hypothetical protein |
Protein accession | YP_001278517 |
Protein GI | 148658312 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.965892 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGTCG TTCACGTCCA CTCCTGGCGC AGGTATGTCG GGCTGGCGCT GGTAACAGCA AGCATACTGG CGTTGCAGAT CACGTTCACC CGCGTGTTTT CGATCATGAT CTGGCACCAT TTCACCTACC TGATCATTGG TGTAGCGCTC CTGGGTGGCG GCGCATCCGG CACATTTCTG GCAGTGCGCG GCTGGAGCGC TGCAACGCTC GAACGTCGAT TGGGCAGGCT TGTCATTGGG TATAGCCTGA TGGTCCTGCT CAACCTGGCG ATCATCGGCG GCATCGCTAT CGATCCGCTG CGGGGCAGTC AGATTGTTCA AACCCTCATC GGGCTGGCAA TCTACTTTGT CGGGCTGTTC ACGACCTTTT TTCTCGGCGG TGTGATCGTT TCCGGCGTTT TCACCATCTG GCACAAAGAA GCGCACCGCC TCTACTTCGC CGATATGCTC GGCGCAGGCG CGGCGACGCT GGCAGTGGTG TGGGTGATCC AGGCGATTGG CGGTCCCGCG ACGATTGCAG CAACGGCGCT GCTCACGCTG GCAGGCAGTC TTCTGTTCGG CGTCGGTCTC ACGCGCCCCT GGCGCATCGG CGCAGCGGCG CTCGGCGTCG GGCAGGGCGG GCTGATCCTG TGGTTGATCC TCGGTTCGCC GCTGCACCTG CCGGTTCCGG GATCGAAGGA ACTCGGATGG GCGCAGCAAC ACTTCGACGC TCGCCCGGAG TACACCCGCT GGAATCCGGT CGGGCGCGTG GATGTGCTGC CGACCATTCA GGTCAAAGAA CCGATGATCG TTGGCGGCAT CAGCCGGGTC TATCTGGAGA GCGACGCATT TCAGCAGGCG CCATTGTACG ACCTGAAACT GGTCACGCTT GATGGGACCT CAATGACCGG CATGTACCGT TTTGATGGAA CCGACCAGGA TCTGCAACGC TTTCGCTTTC TCGACCACGC CATCATCAGC GCGCCGTACC ATCTGGGGCT GAAACACGAC ACAACGCTGA AGATCGGTGT TGGGGGCGGG CTTGACATTC TGCTGGCGCG ATTGTACGGC GCCAGGCAGA TCACCGCTAT CGAACTGAAC GCCGATGTCG TGAAGTTGCT GGAAGGACCC TACCGCGAGT TCAGCGGCAA TCTCGCAGGG CACCCCTCGA CACGCATCAT CGTTGCAGAA GGACGGAGTT TCCTGACCCG CGATACCAGC ACCTATGACC TCATTCAGGG GATCGGTCTC GATAATCTGG TTGCTCTTTC GGGTGGTGCG TATGTGCTTT CGGAGTCGTA CCTCTATACT GTCGACTCGT TTGCTTTGGT GCTGAACCGG CTCAACCCGG AAGGGGTGTT TGCCTGGACA CGCAACGTCG ATCAGCCGCC GCGCGAAATG CTGCGGATCA CCGGTCTGGC TGCGGAGGCG TTGCGACAGC GCGGCGTCGC CGATCCTGCG GCGCACATTG CAATTGTTGC GAACGACACC AACACCCAGG CGACGCTGCT GGTCTCGCCG TCTCCGTTTT CGCCGCAGGC GATTGAGCGA CTGCGGGCAT GGGCGCGCAC CAATGCGTTC ATCATGCTGC ACGATCCACT GGAACGTCTC GACACCACCT ATGCAGCATA CCTGCATGCG CCCGATCCGC GCGCTTTTGA AGCAGCGTAT CAGTTCAACA TCTTTCCGGT GACAGACGAC AATCCGTTCT TTTACAACTA CTTCAGATGG GATCATGTCG CCTTCAATCA GGCATTCAGC GGCAAGATCA ACCGTTTTCC GATCGGCAAT CTCATTCTGA TCACCATGGC TGGCTTTTCG CTGGCAAGCG CGGCTATTTT TATCATTGCA CCTCTCTGGC GCCACAACCG GCGGGGTCTG CAACTGCCGC TGGCACGCCC GATGCTGGTG TATTTCAGTG CGCTGGGAGT CGGCTACATT TTTGTGCAGA TTGTGCTGAT CCAGCGTTTC ACCCTGTTCA TCGGCTATCC TACCAGCGCC ATTACAACGA CGATTTTCAG TATGCTGATC TTCTCTGCGG CAGGAAGCCT GCTCAGCCGC CGCCTGATCG ATAGCGCGGC GCGGTTGCGC GCGGTGTTGA TCGGTGTGGC GGTTGCAATC GGCATCTACA TTGTGACGTT GCCGTCACTC TTTCAATCGT TCCTGCACCT GTCGGATGGT GTGCGCGTGG CGTTGAGCGT TCTGATGATC GCGCCGCTGG CGTTGATCAT GGGGATGCCG TTCCCCACGG GACTGCGACA GCTTGGTATG CACGGCGCAA CCCTGGTGCC ATGGGCATGG GGGATGAACG GCGTGTTCTC GGTGGTTGGC TCAACCCTGG TGATTATTAT CAGCATGGCG AGCACATTTA CGGTAGCAAT GGCGTGCGCA GCACTGTTCT ATGCGATATC AGCATTCGTT GCCGCCGGTC TCTACCGGCG CGAGGCGGTT CAGACGGCGG CGGCGGTCAA TATGTCACCT CTGTAA
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Protein sequence | MAVVHVHSWR RYVGLALVTA SILALQITFT RVFSIMIWHH FTYLIIGVAL LGGGASGTFL AVRGWSAATL ERRLGRLVIG YSLMVLLNLA IIGGIAIDPL RGSQIVQTLI GLAIYFVGLF TTFFLGGVIV SGVFTIWHKE AHRLYFADML GAGAATLAVV WVIQAIGGPA TIAATALLTL AGSLLFGVGL TRPWRIGAAA LGVGQGGLIL WLILGSPLHL PVPGSKELGW AQQHFDARPE YTRWNPVGRV DVLPTIQVKE PMIVGGISRV YLESDAFQQA PLYDLKLVTL DGTSMTGMYR FDGTDQDLQR FRFLDHAIIS APYHLGLKHD TTLKIGVGGG LDILLARLYG ARQITAIELN ADVVKLLEGP YREFSGNLAG HPSTRIIVAE GRSFLTRDTS TYDLIQGIGL DNLVALSGGA YVLSESYLYT VDSFALVLNR LNPEGVFAWT RNVDQPPREM LRITGLAAEA LRQRGVADPA AHIAIVANDT NTQATLLVSP SPFSPQAIER LRAWARTNAF IMLHDPLERL DTTYAAYLHA PDPRAFEAAY QFNIFPVTDD NPFFYNYFRW DHVAFNQAFS GKINRFPIGN LILITMAGFS LASAAIFIIA PLWRHNRRGL QLPLARPMLV YFSALGVGYI FVQIVLIQRF TLFIGYPTSA ITTTIFSMLI FSAAGSLLSR RLIDSAARLR AVLIGVAVAI GIYIVTLPSL FQSFLHLSDG VRVALSVLMI APLALIMGMP FPTGLRQLGM HGATLVPWAW GMNGVFSVVG STLVIIISMA STFTVAMACA ALFYAISAFV AAGLYRREAV QTAAAVNMSP L
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