| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3460 |
|---|
| Symbol | |
|---|
| ID | 5210437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4339966 |
|---|
| End bp | 4341804 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640597055 |
|---|
| Product | chaperone protein DnaK |
|---|
| Protein accession | YP_001277768 |
|---|
| Protein GI | 148657563 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0443] Molecular chaperone |
|---|
| TIGRFAM ID | [TIGR02350] chaperone protein DnaK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0141145 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAA TCATTGGCAT CGACCTTGGC ACGACCAACT CCGTCGTCGC GGTGATGGAA
GGCGGCGAAC CGGTGGTCAT TGCCAATGCC GAGGGGAGCC GCCTTACTCC TTCGGTGGTG
GCGATCAATA AGGCGGGTGA ACGCCTGGTC GGGCAGGTTG CCAGGCGTCA GGCGGTGGTC
AACCCGGAGC ATACGATCTT TTCCGTCAAG CGGTTCATCG GGCGCAAACT GTCCGACCCG
GCGGTGCAGA AGAGCCGGTC GCTGATGCCG TATCGCCTGG TGGAAGCGCC GAATGGCGAT
GCCTGGGTGC ATCTGGCCGG GCGCGACTAT AGCCCGCAGG AGATCTCGGC GTTTGTGCTG
CAAAAACTCA AAGCCGACGC CGAGGCGTAC CTCGGCGAAC CGGTGACGCA GGCAGTTATT
ACGGTTCCTG CCTACTTCAA CGATAGTCAA CGTCAGGCGA CGCGCGACGC CGGTCGGATC
GCCGGGCTGG ATGTGGTGCG CATTATTAAT GAGCCGACCG CTTCGGCGCT TGCGTATGGT
CTCGATCAGA ACAGGCATAA TCATCTGATT GCGGTCTACG ATCTCGGCGG CGGGACGTTC
GATATCTCGA TCCTTGAACT CGGTGACGGC GTCTTCGAGG TGCGAGCAAC GAATGGCGAT
ACTCACCTCG GCGGCGATGA TTTCGATCAG CGGATCATGG ATTGGATGGC GACCGAGTTC
AAGAAAGAGA CCGGTATCGA TCTGCGTACC GATCGGACGG CGCTGCAACG CCTGAAGGAG
GCTGCCGAAA AGGCCAAGCA GGAACTCTCG ACGGTGTTGC AAACCGACAT CAGTCTGCCG
TTCATCACCG CCGACGCCAG TGGTCCGCGG CACTTGAACC TGACGCTTAC CCGCGCTCGC
CTGGAGCAGT TGACGGGTGA TCTGATCGAG CGCACCATCG GTCCCATGCG TCAGGCGCTT
GTTGATGCCG GGGTGCGCCC AAACGACATT GATGCGGTGG TGCTGGTCGG CGGGCAGACG
CGCATGCCGG CAGTGCAGGA GATGGTGCGG CGTTTCTTCA ACCGGGAGCC GCATCGGGGT
GTGAATCCGG ACGAGGTTGT GGCGATTGGC GCCGCAATTC AGGCGGGTGT TCTGGCGGGG
GAGGTCGGAA ACGTGGTGCT GCTCGATGTG ACGCCGCTGA CACTCGGCAT CGAAACGCTC
GGCGGCGTGA TGACGCCGCT GATCGAGCGG AATACAACTA TTCCAACTCG CAAGAGCCAG
GTTTTCTCAA CGGCTTCGGA TAATCAGAGC AGCGTCGAGA TCCATGTGCT GCAGGGCGAG
CGCGCCGAGG CGCGCGCCAA TAAATCCCTC GGTCGCTTCG TGCTCGATGG CATCCCGCCA
GCGCCGCGCG GCGTACCACA GATTGAGGTG ACGTTCGATA TCGATGCGAA CGGTCTCTTA
AGTGTCTCAG CAACTGATAA ACGAACCGGA GTTGCGCAGC ATATTACGAT CACCGCTTCG
TCTGGTCTTT CAGAGGATGA GATTCAGCGG ATGATCGCAG AGGCGGATCA GTACGCCGAA
GAGGATCGGC AGCGTCGTGA CCTGATCGCG GCGCGCAATG CCGCAGATAG CGTTGTCTAC
AATGCCGAGC GTGCACTGCG CGAAGCTGGT GAGACGGCGG ATGAGACGGT GCGTGTCCGT
ATCCAGGAGC GGATTGCAGC GGTGCGCCTG GCGATCGAGG GTGACGACAG GAACGAGATA
CGTAATCGAA CGGCGGAACT TACGGTTGCG TTGCAGCAAC TGGCGCAAAT GACTGCTGCG
CGCAGCGATC AGGATGAGGA AGCGGGTCGT GCACATTGA
|
|---|
| Protein sequence | MGKIIGIDLG TTNSVVAVME GGEPVVIANA EGSRLTPSVV AINKAGERLV GQVARRQAVV
NPEHTIFSVK RFIGRKLSDP AVQKSRSLMP YRLVEAPNGD AWVHLAGRDY SPQEISAFVL
QKLKADAEAY LGEPVTQAVI TVPAYFNDSQ RQATRDAGRI AGLDVVRIIN EPTASALAYG
LDQNRHNHLI AVYDLGGGTF DISILELGDG VFEVRATNGD THLGGDDFDQ RIMDWMATEF
KKETGIDLRT DRTALQRLKE AAEKAKQELS TVLQTDISLP FITADASGPR HLNLTLTRAR
LEQLTGDLIE RTIGPMRQAL VDAGVRPNDI DAVVLVGGQT RMPAVQEMVR RFFNREPHRG
VNPDEVVAIG AAIQAGVLAG EVGNVVLLDV TPLTLGIETL GGVMTPLIER NTTIPTRKSQ
VFSTASDNQS SVEIHVLQGE RAEARANKSL GRFVLDGIPP APRGVPQIEV TFDIDANGLL
SVSATDKRTG VAQHITITAS SGLSEDEIQR MIAEADQYAE EDRQRRDLIA ARNAADSVVY
NAERALREAG ETADETVRVR IQERIAAVRL AIEGDDRNEI RNRTAELTVA LQQLAQMTAA
RSDQDEEAGR AH
|
|---|
| |