| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3392 |
|---|
| Symbol | |
|---|
| ID | 5210369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 4261139 |
|---|
| End bp | 4262671 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640596988 |
|---|
| Product | HEAT repeat-containing PBS lyase |
|---|
| Protein accession | YP_001277701 |
|---|
| Protein GI | 148657496 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1413] FOG: HEAT repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.323304 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCTCT TTGGACCGCC AAATGTGGAA AAGATGAAAG CCCGCCGCAA TGTGAACGGC
CTGATCAAAG CGCTGGGGTA TAAGAAGGAT TGGGAAGTGC GTTGGGACGC CGCCCGCGCG
CTGGGAGAAA TCAAAGACCC CCGCGCCGTG GAGCCACTCA GCGCCGCACT CAAGGATGAG
AGATTCAGTG TGCGCCAGGC CGCCGCCGAA GCGCTGGGAA AAATCGGCAA TGCCCGCGCC
GTGGAGCCGC TCATCGCTGC ACTCGGTGAT GAAAGAAGCG ATATGCGCCA GGCCGCCGCC
AAAGCGCTGG GCGCGATCGG CGATGCCCGC GCCATGGAGC CGCTCATCGC CGCGCTCAAG
GACAAGGATA GCGCTGTGCG CAAAGCCGCC GCCGAAGCGC TGGACCATCT GGGCTGGAAA
CCAGCACAAG ATGAGAGCGC AGGCTGGTAT TGGATGGCAA AACATGATTG GGACAAATGC
GTGGCTCTCG GCGCACTGGC CGTGGAGCCG CTCATCGCTG CACTCAAGGA TGAGAATAGC
GATGTGCGCC AGGCCGCCGC CAAAGCGTTG GGGAAGATTG GCGACCCCCG CGCCGTGGAG
CCGCTCATCG CCGCACTCAA GGATGAGAGA TTCAGTGTGC GCCAGGCCGC CGCCGAAGCG
CTGGGAAAAA TCGGCAATGC CCGCGCCGTG AAGCCGCTCA TCGCCGCGCT CAAGGACAAG
GATAGCGCTG TGCGCAAAGC CGCCGCCAAA GCGCTGGGCG CGATCGGCGA TGCCCGCGCC
ATGGAGCCGC TCATCGCCGC GCTCAAGGAC AAGGATAGCG CTGTGCGCAA AGCCGCCGCC
AAAGCGCTGG ACCATCTGGG CTGGAAACCA GCACAAGATG AGAGCGCAGG CTGGTATTGG
ATGGCAAAAC GTGATTGGGA CAAATGCGTG GCTCTCGGCG CACTGGCCGT GGAGCCGCTC
ATCGCTGCAC TCAAGGATGA GAATAGCGAT GTGCGCCAGG CCGCCGCCAA AGCGTTGGGG
AAGATTGGCG ACCCCCGCGC CGTGGAGCCG CTCATCGCCG CGCTCAAGGA CAAGGATAGC
GATGTGCGCC GGGCCGCCGC CGAAGCGTTG GGGAAGATTG GCGACCCCCG CGCCGTGGAG
CCGCTCATCG CCGCACATCA GAATTGGTGG GTGGGCGCAG CCGCCGCCTG TGCGTTGGGA
GAAATCAAAG ACCCCCGCGC CGTGGAGCCG CTCATCGCCG CGCTCAAGGA CGAGGACGTG
AATGTGCGCT GGCCCGCCGC CCGTGCGTTG GGAGAAATCA AAGACCCCCG CGCCGTGGAG
CCGCTCATCG CCGCGCTCAA GGACGAGGAA TTGCATGTGC GCTGGGCCGC CGCTGAAGCA
CTGGTTTCCC TCTATCGTAA TGCATCCTTA TCGGAGACAG CGAAGCAGAC AATACTGGCA
TATCGCAGTA AGATAACTTC ACCACACAGT GATGGGTCAT CTTGTGGCGG TCATGATGAC
AATGGTGGCA TCGGCGTGGA TTTTCCCTTA TGA
|
|---|
| Protein sequence | MFLFGPPNVE KMKARRNVNG LIKALGYKKD WEVRWDAARA LGEIKDPRAV EPLSAALKDE
RFSVRQAAAE ALGKIGNARA VEPLIAALGD ERSDMRQAAA KALGAIGDAR AMEPLIAALK
DKDSAVRKAA AEALDHLGWK PAQDESAGWY WMAKHDWDKC VALGALAVEP LIAALKDENS
DVRQAAAKAL GKIGDPRAVE PLIAALKDER FSVRQAAAEA LGKIGNARAV KPLIAALKDK
DSAVRKAAAK ALGAIGDARA MEPLIAALKD KDSAVRKAAA KALDHLGWKP AQDESAGWYW
MAKRDWDKCV ALGALAVEPL IAALKDENSD VRQAAAKALG KIGDPRAVEP LIAALKDKDS
DVRRAAAEAL GKIGDPRAVE PLIAAHQNWW VGAAAACALG EIKDPRAVEP LIAALKDEDV
NVRWPAARAL GEIKDPRAVE PLIAALKDEE LHVRWAAAEA LVSLYRNASL SETAKQTILA
YRSKITSPHS DGSSCGGHDD NGGIGVDFPL
|
|---|
| |