| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1964 |
|---|
| Symbol | |
|---|
| ID | 5208926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2444614 |
|---|
| End bp | 2445453 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640595572 |
|---|
| Product | prephenate dehydratase |
|---|
| Protein accession | YP_001276301 |
|---|
| Protein GI | 148656096 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0077] Prephenate dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.221167 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTGTT CAATCGCGTA TCTTGGTCCT CCCGGTTCCT ACAGCGAGAT TGCGGCGCTG
GCGTATGGCG GGGAACGGGC GATCTGCATT CCGCTGGCAA GCATGCCAGC AGTTGTCACC
GCCGTCGAAA CCGGCGCTGC AACCGCCGGC ATCCTGCCGA TCGAAAATGT GCTCGAAGGG
AGCGTGACCA CCACGCTCGA TCTGCTCATC CACGAGACCG ACCTGCGTAT TGCAGGTGAG
ACGGTTATCC CGATCCGGCA CTACCTGGTT GGGCGCCCTG GTCTGGCGCT GCACGAGATT
AAGGTACTCT ACGGACACCC GCAGTCGCTG GGGCAGTGTC GGCGTTTCAT CGAACGTTGC
CTGCCCGGCG TGGCCACCGT CGCATCCCTG AGCAACAGCG CGGCGCCCGC CGAGGCGCTG
GCGGACGAAC GTCCGGCGGC GGCGATCGGC ACCCTGCGCG CAGCAGAACT CGTCGGCGCA
GCGGTGATTG CGAGCGATAT TCAGGATCGC TCCGGGAATG TCACCCGCTT CATCGCACTG
GGGCGTCACG ACCATCCGCC GACCGGCGAC GATAAGACCA GTTTCTGCTT CGGCTTCGAC
CGCGAAGATC GACCGGGCGT GCTGGTGGAC GCTCTTCAGG AACTGGCGTC GGTGGGCATC
AATATGACCA AACTCGAATC CCGCCCTTCG AAAGAAGTGC TGGGACAGTA CATCTTTCTG
GTTGACATCA ACGGTCACCG CGAAGATCCG ACGGTGGCCG CCGCTCTGGA GCGTATTCGC
GCAAAAACGG GACTGTTCAA GGTTTTCGGC AGCTACCCGC GCTGGCGTGG GCCGCAGTAG
|
|---|
| Protein sequence | MTCSIAYLGP PGSYSEIAAL AYGGERAICI PLASMPAVVT AVETGAATAG ILPIENVLEG
SVTTTLDLLI HETDLRIAGE TVIPIRHYLV GRPGLALHEI KVLYGHPQSL GQCRRFIERC
LPGVATVASL SNSAAPAEAL ADERPAAAIG TLRAAELVGA AVIASDIQDR SGNVTRFIAL
GRHDHPPTGD DKTSFCFGFD REDRPGVLVD ALQELASVGI NMTKLESRPS KEVLGQYIFL
VDINGHREDP TVAAALERIR AKTGLFKVFG SYPRWRGPQ
|
|---|
| |