| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1354 |
|---|
| Symbol | |
|---|
| ID | 5208306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1661271 |
|---|
| End bp | 1662449 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640594965 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001275704 |
|---|
| Protein GI | 148655499 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.977572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG AGTCGGTCGA CCTGTTCTAC GTGGCTATGC CGGAAATCCG CGATGTTGGA
GACGGCAGTC AGGATGCCCT GTTGGTGCGC ATTCAGGTTG GCGAATATGT CGGGTGGGGA
GAATGCGATG CATCACCGCT CACATCGATT GCCAGTTTCG TCTGCCCGAT GTCTCACAGC
GCCTGCAAAC CGGTGCGGGA TTCGGTTGTC GGGCAACCAC TCAACGATTG TGCCGACATA
CGGCGGATCG GTGATCGGGT GCGGGCGAAC AGCCTCGACC TGTTGCAAGC CGATCATACG
CTCTCCGGCA TCGACATCGC GCTGTGGGAT GCGCTTGGTC ATCGCCTGGG CGAGCCGGTT
TACCGGCTGC TCGGTTACCG ACACGCGACG CCGAAACTCC CGTATGCATC GCAACTGTTC
GGTGATACAC CGCAGGAGAC TCTGCACAAG GCGCGCCTGG TGCGCGCACT TGGGTATCGG
GCGGCCAAAT TCGGTTGGGG ACCGTTTGGC AGGGGTGCGC TCAGCGAAGA TATCGATCAC
GTGCGAGCGG CGCGCGAGGG GTTGGGACCG GAAGGGGTGT TGCTGATCGA TGCCGGAACA
GTCTGGGGTG ATGATGTCGA ACGCGCCGCG CTGCGTCTGG AGGTGCTGCA ACAGTGCCGG
GCAACCTGGC TGGAAGAGCC GTTCACCTCC GGGGCGCTCG ACGCTTACCG TCAACTGGCG
CAATTGAGCG GACGGGTGCG CCTGGCAGGG GGCGAGGGAT GCCACAACTA CGCAATGGCA
GAGCATATGC TGAACTACGC TGGCATTGGC TACATTCAGA TCGATGCCGG TCGGATCGGC
GGCATCAGCG TCGCAAAGCG GGTTGTCGAC GCCGCCCACG CCCGTGGCAT TACCTATGTC
AACCATACGT TCACGTCGCA CCTGGCGCTG AGCGCTTCAC TGCAACCCTA CGCTGGCAGC
GACGCCGATC TGCTCTGTGA ATATCCTGTC GAAACCTCGC CGCTTGCGCA GAGCATCACC
CGCGAGCGGA TTATGCCTGA CCAGGATGGC ATGATTCGCA TCCCCGAACG TCCCGGTCTT
GGCGTCACAC CCGATCTTGC TGCACTTGCA CCGTATCTGG TGGATGTCGA GATTCGCGTC
GGGCGGCAGG TTGTCTATCG GACGCCGGAA CTGCGTTAG
|
|---|
| Protein sequence | MKIESVDLFY VAMPEIRDVG DGSQDALLVR IQVGEYVGWG ECDASPLTSI ASFVCPMSHS
ACKPVRDSVV GQPLNDCADI RRIGDRVRAN SLDLLQADHT LSGIDIALWD ALGHRLGEPV
YRLLGYRHAT PKLPYASQLF GDTPQETLHK ARLVRALGYR AAKFGWGPFG RGALSEDIDH
VRAAREGLGP EGVLLIDAGT VWGDDVERAA LRLEVLQQCR ATWLEEPFTS GALDAYRQLA
QLSGRVRLAG GEGCHNYAMA EHMLNYAGIG YIQIDAGRIG GISVAKRVVD AAHARGITYV
NHTFTSHLAL SASLQPYAGS DADLLCEYPV ETSPLAQSIT RERIMPDQDG MIRIPERPGL
GVTPDLAALA PYLVDVEIRV GRQVVYRTPE LR
|
|---|
| |