| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6290 |
|---|
| Symbol | |
|---|
| ID | 4036728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007972 |
|---|
| Strand | - |
|---|
| Start bp | 144493 |
|---|
| End bp | 145728 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637975316 |
|---|
| Product | Type II secretory pathway component PulF-like protein |
|---|
| Protein accession | YP_582099 |
|---|
| Protein GI | 94152697 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.033403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAAC GATTGAAAGA CGCACTTGCC GCGATCAAGC GCAAGAAGTA CGCCGCGGCC
GCCGAGAGCA TCGGTGGTGC GACGGGGCGC TTTCCGGACA AGCTGTGGTT CGCAAAGCTG
GAGTTCTCGC CCAAGCGCGC GGACTATTAC TACGACCTCG CCATGCGCAT CGAGAAGATG
CCGGGTGAGC CGATCTCGAA CCATTTTGCA AAGGATGCAG CCCGTCGCGC CGGCGAGCCG
CTGGGTCTGC TGGCAGCGCT ATGGCTGGCG CGCTACGAAG GTCTCGACGG GCAGACGCAG
GAATCGCGGC TGGCCGAAAT TTTTCGGGGC ACAGTTCCTG ACGAAGACCT CGCTATCCTG
GCGGTGGCCG AGCAGGGCGG CGATGTCAAA GACGGGTTGT TCCGATTGGC GGAAAACCTC
CGCGCGATGA GCGAGGCCAA GTCCAACATC TTGCTGCTGC TGGCGAGCAT GGGCATCACG
CTCATCATTC TGCACGTCTA CCTTGGCGTC ATGGCCTTTA TTGTGGCGCC GATGCTGGAC
CGCAGCTTCG CAAACCTCCT CCCCGTCGAC GGCTACGGGC CGATTGCCCG CGCATTCCAT
CTGGGTACCA CCTTCCTGCG CGAGTGGGGC TGGCTCGTCC TCCTGGGTGA GGTGGGGCTC
GTATGGTGGG TGCTTCGTGC GCTTCGCAAC TACACGGGAC CGTACCGCGC ATGGCTGGAC
AAGAACGTCA TCATCTTCGA CTTCTTCCGG CGCTTTCAGG GCGCACAGTT CCTCGCGGCC
ATGTCTGCGG TGACGCAGCG CTTCGGCGGC GATATGAACA ACCTGACCAA CGCGCTGGAG
ATGATGCGCG CCAACGCGTA CCCCTATCTC GCCCAGCACA TCCGGCGTAT CGAGGCGACG
CTTGAAGAGT CGCCCAATGC CGGCGGAAAG ATGTTCGACA CGGGGCTCTT TGACCGTGAC
ACCACCTATC GGATCCAGGA CATCGCGGAA TATGAGGACG ACCTTTCCAA GATGCTGAAC
ACGGTATCGG TGACGGTGTT GAAGACCGCG CCGCGCGAAC TCGAACAGCG AGCGTCGAAG
TTCAACCGGC GTTCCTCCGT TCTGCTGATC GTCCTGATTA CAGCCCTCGC ATTCATGCCG
GCGTTTATGG CGCGTGAGCT GAAGAAGAGC ATGCAGGTGC ACGGCATCAA GACGCATCAG
AAGAGCATCA ACCCCTCCAC CCTCCCATCC AATTGA
|
|---|
| Protein sequence | MMQRLKDALA AIKRKKYAAA AESIGGATGR FPDKLWFAKL EFSPKRADYY YDLAMRIEKM
PGEPISNHFA KDAARRAGEP LGLLAALWLA RYEGLDGQTQ ESRLAEIFRG TVPDEDLAIL
AVAEQGGDVK DGLFRLAENL RAMSEAKSNI LLLLASMGIT LIILHVYLGV MAFIVAPMLD
RSFANLLPVD GYGPIARAFH LGTTFLREWG WLVLLGEVGL VWWVLRALRN YTGPYRAWLD
KNVIIFDFFR RFQGAQFLAA MSAVTQRFGG DMNNLTNALE MMRANAYPYL AQHIRRIEAT
LEESPNAGGK MFDTGLFDRD TTYRIQDIAE YEDDLSKMLN TVSVTVLKTA PRELEQRASK
FNRRSSVLLI VLITALAFMP AFMARELKKS MQVHGIKTHQ KSINPSTLPS N
|
|---|
| |