| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6263 |
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| Symbol | |
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| ID | 4036701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007972 |
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| Strand | + |
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| Start bp | 117594 |
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| End bp | 120413 |
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| Gene Length | 2820 bp |
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| Protein Length | 939 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637975289 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_582072 |
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| Protein GI | 94152670 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTAA CAATATCCGT TTCGAGCGCG GCGACGGGCT TGCACCCGTT GCGAGCGCTC
CAAAATATAG CTTCGCTGAA GCTGCTGGGA ATTTTTGGAA AATTTCTTCC GATCGCATTA
TCACTTGCGG GATTTTGTTT CGCTTCCTTT GTATCAGAGG CAAAGGCTGA TCCGCCCGTG
CAAGCCTTCA TTCTTAGATG GAACGATACC TATCACAACG AACCGGGGAA CATCAAATCA
TCGGCTGCAG CCTTATGTAC AGAGGTTCTG CCGAAAACCT TTGCTTCGGA CATGCCGGGA
TGGACGCTGA CGAGTTTCCC ATATTTCGGC AGTCGGGGTA TGTGCGTGAT GGATATAAGG
CAGAATTACG ACGGAACCGT TATGACAGAC TGGCCCGCCG GCTGGCCATA CTTGTATGGT
TCCATTTGCG AGGATGGGTC GAAACCTGAT ACGACGAAGC CTTTGGATCA ACAATGCGGC
ACGGTCCGGG GAAACGTGTC GAACTACCCG GGCTCGCAGA TCCCCGTCAA TCAAATCGAT
GAGCGGAGCT GTGCCGTTGG CAATCCATGC TCCGTTGGCT CAGGGCTAAA GCGGCAATCC
GAGGTTGACT ATGTCGGCGC CGGCGCTCAG CCTCTATCCC TGCAACGAAC CTACCGATCG
AGCTACCTGG TGGCGCCAAG AAAAGGCTTC GGTGCCCTGT GGATGCACGA ATGGCAGAGG
CGTCTGGATT TTTCTTCGTA CTCTGGCACC ACGCCTCTGC TCACTGTTCA GCGTGCCGAT
GGCAGTCATT CCAACTTCGG CCCCAGCAAC GGTATTTGGC TTTCCGTAGA TGGAAAAGGC
GATTCCCTGA CGCCACTTCG AGATGGTAAA GGAGTAATTT CTGGCTGGCG GTTTGCCCAA
ATAACGATGG GAGTCACGGA AGACTTTGAC ATTGCCGGCA AGCTCCTGCG CGTACAAAAA
GCCAATGGTT GGGCAACGTC GCTGACATAC AGTGACGCAA GCACGCCCTC GAGCATTGCA
CCGGAACCGA ATCTTCTCTT GGAAGTTCGG AATGCATTTG GTCAGAAGCT CTCTTTTGCG
TACGATGCGC AGAGTCGTAT CGTTGCTGTC ACCACGCCCG GCGGGAACGT AATCACATAT
TCGTACGATG CCAACGGCAT GCTGAACGGC GTGACCTATG CCGATGGCAC GCGACGCCAG
TATCACTACG AAAACTCCCA GTACCGCTGG GCGCTGACGG GCATCACTGA TGAAAAGGGC
GTCCGGTTCG CGACGTATGC CTACGATTCC CTCGGCCGCG CCACCAGCAC CGAACACGCC
GGGGGCGTCG ACAAGTTCCA ACTGAGCTTC CTCGGGAATG GACAAACATC GGTGACCACC
GCGGACGGCA CCAGCCGCAC CTTCACCTCG GAACTGCAGG GCAACGTGCT ACGTGCTACC
GGCGCCTCGG CCCCCTGCCC AGCGTGCGGG GACATCGCCA AGGCGGTGAC CTACGATGCG
GCAGGAAATG TTGCGAGTCG GAGGAATTTT GCGGACAAGG AGACGCGCTA CAGCTACGAT
GCGCTCGGGC GCGAGACCCA ACGCATCGAG GGCTACGGCA CGGCGGACGC GAAGACCACG
ACCACCGAGT GGCATCCGAC GTGGAATTTG CCGCTGAAGG TGGCTGCGCC CGGGCGGGTC
GACTATTTCA CTTACGATGG TCAAGGTCAA ATGACCGCCC ATGGGTGGTT TCCCACAGCC
GACGTCAATG GCGGCCAAGG GCTCAACGCA GCCCCATCGG GAGCGGTGTC CAGCAACAGC
TATGGCTATG ACGCCAACGG GCTAATGACA GCATTGACCG AACAAGTCGA TGGCACGGCG
ACCCAGCAGT GGACGTTCGG CTACGACGCA CAAGGCAATT TGACGTCTGC GGCAGACGGA
ACCGGTAGAA CTTCGCATGC TGTGCAATAT GATGCCGCCG GGCGCCTCCT CGAAGCGGTC
GATCTGGAAG GCGTGACCGT CAAGTATGTC TACAATCAGC GAGGTCGCGT GCTCCAGTAC
CTGTATGGCG AGAACGTGAC CGCATACGTG TACGACGCAA TCGGGCAGAA AGTCCAGGTG
ACCAGTCCCA ACGGAGACGT CACGAACTAC ACTTACGATG CGGCGCACCG GCTCATCGAC
GTATTGTTCA ATGGTCAGTC GCTCACTGGC CCAGACCCGG ATGAGCAACC TCTGGCCCTA
GCCAGGACAT CGGCAGAAGA TGCAGGGGCC AATCCCTTCA GTGCATGGAT GGGTTGGGTT
TCGAAGCTAT TCAACTGGTT GTTCGGTTCG GCACATGCGC AAGCGATACC AGTGCCGGTA
ACGGCAGTAG GCGCATCTAT GTCGATTCCT GGTACCTACA CACCGAACCC ATGGGACGTG
CTTGCCCCCA ACCTCGGTGG AAAGAAGCCT TGGGAGTGGA TGGCGATTTG GACGACACGA
TTGATTGAAG CGTGTTCGGG AAACAGTCCG AAAACCGATC ACCGAGGACG GATTCAGGCG
CAAGGTCCTG GCTATCCAGA TGAGGGCGTT GGCGATGTTG AGGCGTGGGC GCAGGCGGAC
CCGCTTTCTG CAGCGTCTGG ATTGGCGAAA CTGGAAGCCC TTGAAGGGCG AATGACAAAG
AAGCAGTATC AAGCTCGTTC ACAGGCTTTG GCGAGAGCTA AGCGGTTTGT TGTGAATGCC
AGCAGAGGCG GCGGAACAGG CCCAACGAAA CAGACCTTCC GCAACGATGA GGTCATCGCA
GTCAATGGCA GTGAGCGCAT TGATATTGAG GTACAAAAAG GCATGGCTTT CGTGCCGTAA
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| Protein sequence | MNLTISVSSA ATGLHPLRAL QNIASLKLLG IFGKFLPIAL SLAGFCFASF VSEAKADPPV
QAFILRWNDT YHNEPGNIKS SAAALCTEVL PKTFASDMPG WTLTSFPYFG SRGMCVMDIR
QNYDGTVMTD WPAGWPYLYG SICEDGSKPD TTKPLDQQCG TVRGNVSNYP GSQIPVNQID
ERSCAVGNPC SVGSGLKRQS EVDYVGAGAQ PLSLQRTYRS SYLVAPRKGF GALWMHEWQR
RLDFSSYSGT TPLLTVQRAD GSHSNFGPSN GIWLSVDGKG DSLTPLRDGK GVISGWRFAQ
ITMGVTEDFD IAGKLLRVQK ANGWATSLTY SDASTPSSIA PEPNLLLEVR NAFGQKLSFA
YDAQSRIVAV TTPGGNVITY SYDANGMLNG VTYADGTRRQ YHYENSQYRW ALTGITDEKG
VRFATYAYDS LGRATSTEHA GGVDKFQLSF LGNGQTSVTT ADGTSRTFTS ELQGNVLRAT
GASAPCPACG DIAKAVTYDA AGNVASRRNF ADKETRYSYD ALGRETQRIE GYGTADAKTT
TTEWHPTWNL PLKVAAPGRV DYFTYDGQGQ MTAHGWFPTA DVNGGQGLNA APSGAVSSNS
YGYDANGLMT ALTEQVDGTA TQQWTFGYDA QGNLTSAADG TGRTSHAVQY DAAGRLLEAV
DLEGVTVKYV YNQRGRVLQY LYGENVTAYV YDAIGQKVQV TSPNGDVTNY TYDAAHRLID
VLFNGQSLTG PDPDEQPLAL ARTSAEDAGA NPFSAWMGWV SKLFNWLFGS AHAQAIPVPV
TAVGASMSIP GTYTPNPWDV LAPNLGGKKP WEWMAIWTTR LIEACSGNSP KTDHRGRIQA
QGPGYPDEGV GDVEAWAQAD PLSAASGLAK LEALEGRMTK KQYQARSQAL ARAKRFVVNA
SRGGGTGPTK QTFRNDEVIA VNGSERIDIE VQKGMAFVP
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