| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5543 |
|---|
| Symbol | caiB |
|---|
| ID | 4042404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 2288449 |
|---|
| End bp | 2289714 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637980961 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_587671 |
|---|
| Protein GI | 94314462 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGACC AAGCTCGCGT TGAATCCTTA CCGGAACATG AGGCTGGTGG GCCAAAGAGC
GGCGGCGTCC TGGATGGCGT CCGTGTAATT GATTTCACGC ACTTTGTCGC CGGACCATTG
GCCACGATGA CGATGGCCGA CTTTGGTGCC GATGTCATCA AGGTAGAGGC GCCCGTGAAG
GGCGATGATT TTCGGTACTA CCCGCCGATG GACCCGGAAA TTCCGGCTCA GGGTGCTCCC
TACCTGTGGA CCAACCGTAA CAAGCGAAGC ATCGGCATCG ATATGAAGTC GCCGGAGGGC
CTGGCCCTCG CAAAGTCATT GATCGCAGAG GCGGATGTCG TTGTTGAGAA CTTCTCGACC
GGCGTGATGG AGCGTTTTGG GCTCGACTAC GAGACCTGTC GCAAGCTCAA CCCAAGGCTC
ATCTATTGCT CGGTCTCGGC GTATGGGCGG ACAGGGCCCT ATGCGGATCG CCTCGGATTC
GACCCTATCG CGCAAGCTGA GAGCGGCTTC ATCTCGATGA ACGGCTACTC GGACCGCCAG
GGAGTCCGGA CCGGCGCCGC AGTGATGGAC ATCAGTACCG CAATGATGGC GACTAACGCG
ATCCTTCTCG CCCTGCTGGG ACGCGCGAAG GACGGCGAAG GTCAGTTTGT CGAGGTCGCA
CTTTTCGACA CAGCCATTCT GATGACTGGG TTCGCAGCCA TGCAGCATTT GACGACCGGC
TATGAACCTC AGCGTAACGG TAATACCAGC CCGGATACGT GTCCGTCGGG CGTTTTCCAC
TGCCAGGACG TGCCGTTCTA CATCAACTGC GGCAACGACG GGATCTTCGT CCGGCTGTTT
GAACAGGTAC TTGATCGCCC AGACATCGCT CATGACCCCG TCTTGTCGAA GCGGGCCAAT
CGCTTGGAGC GACGCGACGA GCTATTCAAA CTCATGGGGG AAGAATTCGG CAAGCATCCG
TGGGCCTATT GGCAGCCGAA ACTCCGCGCA GCCGGGGTTC CAAGTGGTCA AGTCAAAACG
CTGGCTCAGG CACTCTCGTC TGACGAAGCA GCCTCTCGCA ACCTGGTTAG CCGAATCCAG
CATCCAGTGA AAGGTTGGAT TCCCAATATT TCTACGCCTC TTAGGCTTAG TCGTACGCCA
GCGCGGGCTG CAACGGCCGC ACCCGCCGTC GGCGCTGACA CCGAGCAGGT GCTCAAGGAC
GTTCTCAAAC TCAGCGACCG CCAAATCTCT GAACTCACAG CCTCCGGGGC GTTTGGTGCG
AAGTAG
|
|---|
| Protein sequence | MFDQARVESL PEHEAGGPKS GGVLDGVRVI DFTHFVAGPL ATMTMADFGA DVIKVEAPVK
GDDFRYYPPM DPEIPAQGAP YLWTNRNKRS IGIDMKSPEG LALAKSLIAE ADVVVENFST
GVMERFGLDY ETCRKLNPRL IYCSVSAYGR TGPYADRLGF DPIAQAESGF ISMNGYSDRQ
GVRTGAAVMD ISTAMMATNA ILLALLGRAK DGEGQFVEVA LFDTAILMTG FAAMQHLTTG
YEPQRNGNTS PDTCPSGVFH CQDVPFYINC GNDGIFVRLF EQVLDRPDIA HDPVLSKRAN
RLERRDELFK LMGEEFGKHP WAYWQPKLRA AGVPSGQVKT LAQALSSDEA ASRNLVSRIQ
HPVKGWIPNI STPLRLSRTP ARAATAAPAV GADTEQVLKD VLKLSDRQIS ELTASGAFGA
K
|
|---|
| |