| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5053 |
|---|
| Symbol | |
|---|
| ID | 4041915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1742952 |
|---|
| End bp | 1744562 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980474 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_587184 |
|---|
| Protein GI | 94313975 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATC CTTACATCGC GCTGGAAGGC GTGTCTTTTG TCCTGCCGGA CGGCAGAACA
CTTTTCTCCG ATCTCGACGA GCAGTTTGAC CAGCAGCCCA CCGGTCTGGT CGGGCGCAAT
GGCGCTGGCA AGACCGTGCT GGCGCGGATT CTGGCCGGGC AGTTGCAGCC GGCCACGGGG
CGTTGTGTGC GCTCTGGCAG CGTGTGCTAC CTGGCCCAGC AGGTGACGCC CGCCGCGGAG
GCTTGCGTGG CCTCTCTGGC AGGCGTGCAG GATGCGCTTG ACGCGCTCGC GCGTATCGAA
GCCGGCAGCA TCGCCACTGA GGACTTCAAT GTACTGGGTG ACCGATGGGA TATCGGTCAG
CGGCTGCGGC AGGAACTGGA GCGCAACGGT CTCGGTCATC TGGACGCGGC GACACCAGCC
CGCGCACTGA GTGGCGGCGA AGCGATGCGC GTCGCGCTGA TTGGCGCATG GTTGTCGGAG
GCTGACTTCC TGATCCTGGA CGAGCCGAGC AACCACCTGG ACCGGGCCGG CCGGCAGGCG
TTGATCGAGC AGCTGCGACG TTGGCCGCGC GGGCTGATCG TCGTCAGTCA CGACCGGCAG
TTGCTGGCGT CGATGGCGCG TATCGCCGAG CTTTCCGCGC TGGGGCTGCG CAGCTATGGT
GGCGATTACT CGTTCTATGC CAGCAGCAAG GCCCACGACC GGCGCAATGC GCTCGATCAG
CTCGAGCAGA GCAAGCGCGA ACGCAAGCGC AAGGAGCAGG CCATGCGCGA GCAGACCGAT
CGGCAGGCCC GGCGCAAGGC GCGCGGCGAC CGGCACGGCC AGGACGGCAA TCAGGCAAAG
ATCCTGCTCG ATCGGCAGAA GGCGCGTAGC GAGACGTCAG CGGGCAAGCT GCGCCAGCAA
CAGGTCGCGG CCCGGGAGCA ACTCGACGAA CGTGTGCGGG CGGCGGCGCG ACAGGTGGAA
ATCGACGCGC CAATCGTTTT CGCTGCGACG CCAGTGGGCG CTGGCACGCA GCGTTTGGCC
GAACTGGATG CCGTAGCGTT GCCATTCGTG CCGGCCGCCA CGCGCGATAT CAGCCTGACG
CTGACCCGGC AACAACGCGT GGGCGTCATC GGGCCGAACG GATGTGGCAA GTCCACGCTG
CTCAAGGTGC TGGCCGGCCA ACTACAGCCA TTGGCAGGCA CATTCAAGGT TGCGGCGGCT
TGCGTCTATC TCGACCAGCG GCTGGCCGAT CTGGACCCGG CGCTCACGGT GCTCGAACAC
ATGCAGATCG CCAATCGCAT TGCGCCAGAA GCCGACCTGC GCACGCGACT GGCGCAACTT
GGTCTGGACA CACGCAAGAT CATGGCGCCA AGTGGCGCGC TCAGCGGCGG AGAGCGCCTG
AAGGCGGCGC TGGCCTGCGT GCTCTACGCC GATCCCGCGC CGCAACTGCT GTTGCTGGAC
GAGCCCGGCA ATCACCTCGA TCTTCCTTCG CTGGAATCGC TGGAAAGCAT GCTGCGCGGT
TACCAGGGCA CCCTGATCGT CGTGTCGCAC GACGATGGGT TCATGGAAAA CCTCGGCCTG
ACGGATCGTC TGCTGGCAAC CGGCCAAGGT TGGCGTCTCG AGCCCTGGTG A
|
|---|
| Protein sequence | MTNPYIALEG VSFVLPDGRT LFSDLDEQFD QQPTGLVGRN GAGKTVLARI LAGQLQPATG
RCVRSGSVCY LAQQVTPAAE ACVASLAGVQ DALDALARIE AGSIATEDFN VLGDRWDIGQ
RLRQELERNG LGHLDAATPA RALSGGEAMR VALIGAWLSE ADFLILDEPS NHLDRAGRQA
LIEQLRRWPR GLIVVSHDRQ LLASMARIAE LSALGLRSYG GDYSFYASSK AHDRRNALDQ
LEQSKRERKR KEQAMREQTD RQARRKARGD RHGQDGNQAK ILLDRQKARS ETSAGKLRQQ
QVAAREQLDE RVRAAARQVE IDAPIVFAAT PVGAGTQRLA ELDAVALPFV PAATRDISLT
LTRQQRVGVI GPNGCGKSTL LKVLAGQLQP LAGTFKVAAA CVYLDQRLAD LDPALTVLEH
MQIANRIAPE ADLRTRLAQL GLDTRKIMAP SGALSGGERL KAALACVLYA DPAPQLLLLD
EPGNHLDLPS LESLESMLRG YQGTLIVVSH DDGFMENLGL TDRLLATGQG WRLEPW
|
|---|
| |