| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5025 |
|---|
| Symbol | |
|---|
| ID | 4041887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1711192 |
|---|
| End bp | 1712379 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980446 |
|---|
| Product | lipid-transfer protein |
|---|
| Protein accession | YP_587156 |
|---|
| Protein GI | 94313947 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000000479532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.301328 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCGCA AGGTCTTTGT TGCCGGCGCC GGCATGATCC CGTTCAAGAA GCCGGGCACC
AGCGACACCT ATGACGTGAT GGGCGCCACC GCCACGCGCC AGGCGCTGGC CGATGCCGGC
GTCGACTACA ACCTCGTGCA GCAGGCCTAC GTCGGCTACG TGTACGGCGA TTCCACATGC
GGCCAGAAGG CGCTTTACGA TGTCGGCATG AGCGGCATTC CGGTGATCAA CGTCAACAAC
AATTGCGCCA CGGGTTCGTC GGCACTGTTC CTGGCCCGCC AGGCCGTGGC AAGCGGCGCC
GTGGAATGCG CGCTGGCGCT CGGCTTCGAG TTCATGGGCC CGGGCGCGCT GAAGTCGGTC
TGGACCGACC GACCGAGCGC GTTGGAACGC GCGCTCAACC TGACCGACAA GCTGGTCGGC
AAGACCGAAG GCATGAGCAA CGCCATCCGC CAGTTCGCCG GCGCCGGCCA GACGCACATG
CGCAAGCACG GTACCAAGCT GGAAACGTTC GCGAAGATCC GCGCCAAGGC CAGCCGCCAC
GCCGCGAACA ACCCGCTGGC GGTATTCCGC ACCGTGGTCA GCACCGAGGA CGTGATGAAC
GCGCCGATGC TGTGGGATGG CGTGCTGACC CGCCTGATGG CCTGCCCTCC GACCTGTGGC
GCGGCCGCTG CCATCGTCGT ATCGGAAGCC TTCGCCCGCA AGCATGGGCT GCGCACTGAC
GTGCTGATCG CCGCCCAATC GCTGACGACC GATCGCGCCA GCAGCTTCGA GAGCGACATG
ATCCGTCTGG TGGGCTTTGA CATGACGCGT GAAGGTGCGC GCCAGGTCTA CGAGCAAGCC
AGCATCGGCC CGCAGGACGT CGACGTGATC GAGCTGCATG ACTGCTTTGC GCAGAACGAA
CTGCTGACCT ACGAAGGCCT CGGCCTGTGC GACGAAGGCT GCGCCGAGAA GCTGGTCAAT
GACGGCGACA ACACCTACGG CGGCAAGTGG GTGGTCAACC CGTCCGGTGG CCTGCTCTCC
AAGGGTCATC CACTCGGCGC CACGGGTCTG GCGCAATGCT ACGAGATGGT CCAGCAGCTG
CGCGGCAACG CCGATCAGCG CCAGGTGGCC GGCGCGCGTA ACGCGCTCAC GCACAACCTT
GGCCTGGGCG GCGCCTGCGT GGTGACGCTC TACCAAAAGC ACGACTGA
|
|---|
| Protein sequence | MTRKVFVAGA GMIPFKKPGT SDTYDVMGAT ATRQALADAG VDYNLVQQAY VGYVYGDSTC
GQKALYDVGM SGIPVINVNN NCATGSSALF LARQAVASGA VECALALGFE FMGPGALKSV
WTDRPSALER ALNLTDKLVG KTEGMSNAIR QFAGAGQTHM RKHGTKLETF AKIRAKASRH
AANNPLAVFR TVVSTEDVMN APMLWDGVLT RLMACPPTCG AAAAIVVSEA FARKHGLRTD
VLIAAQSLTT DRASSFESDM IRLVGFDMTR EGARQVYEQA SIGPQDVDVI ELHDCFAQNE
LLTYEGLGLC DEGCAEKLVN DGDNTYGGKW VVNPSGGLLS KGHPLGATGL AQCYEMVQQL
RGNADQRQVA GARNALTHNL GLGGACVVTL YQKHD
|
|---|
| |