| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4552 |
|---|
| Symbol | |
|---|
| ID | 4041411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1163034 |
|---|
| End bp | 1165592 |
|---|
| Gene Length | 2559 bp |
|---|
| Protein Length | 852 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637979974 |
|---|
| Product | putative curculin-like lectin |
|---|
| Protein accession | YP_586686 |
|---|
| Protein GI | 94313477 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.602066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0474093 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC ACCCCAGACG GGTATTCCAG CCAATCTTGC TAATCTGTGT CGCCGCAGTT
CTGTCGGCCT GTGGCGGCGA CGACGGAGGC GATGGATCTG CTACGGCAAG CGGAAGCCCG
AGCAACACCG CACGATCGGT TCAATACTAT TCAGGCCAAA AGGCCATTGA CCATCTGGGC
AATTCCCTAA GCGAGTTTGC CGTGCTGCAC GGTATGACGG CAGAGGAACT GAGACAAAAA
TTATTGACCG ACCCCACGCT TTTCGTGACG AGTCTCGCAA AGCTTGTTTA CCGTGACAAC
GCCCGGCAAG CCCAAGTCGT TGCGCCAAAT ACTCTATCGC GATTACAGGT CCTCACCGAG
AGTAGCTCAG CCGACCCGGG TAATGTTTTT GCTTTGCATA GCCGAAGTGG TTCCACCAAG
ACTATTTACC TCAATTTCAA AGGCGGCACT CTTCGCTATC CAACAGCCGT TCCGCCAATC
GTTGAAACTT ATCCCGCATT TGACCTGGAT GGCGACCCTT CCACGTTCAA CACGGAAGAA
AGGCTCGTGA TTCAAGAAGT TTTTCGACGC GTCGCCGAAG ACTTTGCCAT CTTCGACGTA
GATGTCACCA CAGAAGAGCC GGCTCGCGAC AAACTTGTGA GGGCGGATGC CCAAGATGGA
ATTTACGGGC AAGAAATATA CATCACCCGG GACATATATA GTGTCGACTC AGGGGGTGAA
GCACCCATAG GCGTGTTCAA TTCGATAGAC ACACCCGGAC AGCCAGACCA AAGCGACTAC
AACAAGGCGG CGAAAGTTTT CTATGACAAG CTCGCTGTTG CCGCATCTGA TCGCGCGGCG
GTAATAGCCG ACGCCATTTC CCATGAAACT GGACACACAC TCGGACTATC CCACATGGGG
ACCGCTACCG CGACCTACTA CCCTGGCGAT AGCTTCTCCA GTTGGCTGCC ATTAATGTCT
CAGCATCCTA ACGCCAACTC TATCCGAAAG CTCACGACAT GGTCGCACGG GGACTACAAA
AACGCCAACA ACCATGAAGA CGAGCTAGCG ATTATTAACG CTTATGGTTT GAAATTAATA
TCGGACGATT TTGGAGATAC AATCGGAGCC GCCTTTCCGC TTGGAATCGA TGGCACGAAT
AGCGATGGCC GTCCGTCATC ACGGGTCTCC GGCATAATCG GCTCGTCAAC AGATAGCGAC
ATGTTTCGCA TTACGGTGCC CGAAGGCCCG CTTACTATTC AGGCGGACCC TGCCGCCGTG
GGCCCGAATC TGGACATCAA ACTGAGCCTT CTCGATAGTG CCGGCAATTC AATTCAGATT
GTCAAAGACA ACCCAACCAC TGCCGACTCA CTCAGCGCAG GTATCGCATT ACCCCAAATT
GCAGCTGGGA CGTACTACGT AAAAGTGGAA GGAACTGGTC GCGGGTCACC TCTGACCCCC
GACCCGAAGA TCGGTTTGCC ATGGGGTTAC ACAAAGTATG GCAGCTTGGG ATCCTATACT
TTGGCCGTTA TCTATGCTCC GGTATTGGCG GCCGACCAGA TATCCACGTT GACCAAGGAA
AGGACTCAGG CAATGGGATT CAATATCTCG CTGCTGTCTC CTGGGGCATG GAACGTCTTC
GTCTCGGCCG GCACAAGCCT CGTGAAGAGT TATGGCGGCG CTTCGGGAGC AGCTCTCACT
GACGCCGCTA TATTGCCATC TGGAGCGAAG CTAAACGCCG GAGAATCGCT GCGCGCGGGC
GGCATGACGC TCACCATGCA AGCGGACGGG AACCTTGTGA TCTACGACGC GGCGCACAAA
GTCCTCTTTG CCTCAACTAC CAATAGCGTG GACAACCAAG GCTCCGCTCT TAACATGCAG
GCAGACGGAA ACCTTGTAAT CCGCAACCCG GCCGGCAAGT CAGTCTGGGC CTCAGGTACC
GATGACTTTG GCGGGGAGTA CATGGTGTTC GGCAGCGATG GCACTTTGAG TTTGCGCACG
GGAAGCCGAA TAAACTGGCT GCTGCCGTCG CAGTTGGCCG TATTGACGTC GGCACAAGTA
TCAGTGCTGA GTGCAGCGCA GATTCAGGGG TTGGACACTG CTGTCAATAA TTTGTCGTCA
GACGCCCTGA ATTTCATTTC ATCGCTTGGA TCGACCGTTG TTAAACGATG GGGTGGCGTA
ACCGGCGTCG CTCTGACAGA GGTGAAAAAG ATTGCCGCCG GAGGAAAGCT AAATTCTGGT
GTGACCCTGA CGGCCGGAAG CGTGAGCCTC GTTATGCAAG GGGACGGCAA CCTCGTGATC
TACGATACGG CACACAAGGC CGTCTGGGCT TCGAACACGA ATAGCGTGGA CAATCAAGGC
GCACATCTCA ATATGCAGGC AACGGACGGG AACCTTGTTA TGTACACACC AGCCGGCAAA
GCAATTTGGG CCTCTAATAC CAATGACAAC AGAGGAGAGT TTATGGTGTT CGGAAGCGAT
GCATGCATGA GTCTGCAAAC TGGGAGTCGC GTGAGTTGGT TCACCGCGGC ACAAGTGCAA
AGCCTGACAC AAGCCGGCAA GATGCCGGTA GCCCACTAA
|
|---|
| Protein sequence | MKKHPRRVFQ PILLICVAAV LSACGGDDGG DGSATASGSP SNTARSVQYY SGQKAIDHLG
NSLSEFAVLH GMTAEELRQK LLTDPTLFVT SLAKLVYRDN ARQAQVVAPN TLSRLQVLTE
SSSADPGNVF ALHSRSGSTK TIYLNFKGGT LRYPTAVPPI VETYPAFDLD GDPSTFNTEE
RLVIQEVFRR VAEDFAIFDV DVTTEEPARD KLVRADAQDG IYGQEIYITR DIYSVDSGGE
APIGVFNSID TPGQPDQSDY NKAAKVFYDK LAVAASDRAA VIADAISHET GHTLGLSHMG
TATATYYPGD SFSSWLPLMS QHPNANSIRK LTTWSHGDYK NANNHEDELA IINAYGLKLI
SDDFGDTIGA AFPLGIDGTN SDGRPSSRVS GIIGSSTDSD MFRITVPEGP LTIQADPAAV
GPNLDIKLSL LDSAGNSIQI VKDNPTTADS LSAGIALPQI AAGTYYVKVE GTGRGSPLTP
DPKIGLPWGY TKYGSLGSYT LAVIYAPVLA ADQISTLTKE RTQAMGFNIS LLSPGAWNVF
VSAGTSLVKS YGGASGAALT DAAILPSGAK LNAGESLRAG GMTLTMQADG NLVIYDAAHK
VLFASTTNSV DNQGSALNMQ ADGNLVIRNP AGKSVWASGT DDFGGEYMVF GSDGTLSLRT
GSRINWLLPS QLAVLTSAQV SVLSAAQIQG LDTAVNNLSS DALNFISSLG STVVKRWGGV
TGVALTEVKK IAAGGKLNSG VTLTAGSVSL VMQGDGNLVI YDTAHKAVWA SNTNSVDNQG
AHLNMQATDG NLVMYTPAGK AIWASNTNDN RGEFMVFGSD ACMSLQTGSR VSWFTAAQVQ
SLTQAGKMPV AH
|
|---|
| |