| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4166 |
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| Symbol | hpnN |
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| ID | 4041024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 750520 |
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| End bp | 753246 |
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| Gene Length | 2727 bp |
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| Protein Length | 908 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637979589 |
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| Product | putative transporter |
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| Protein accession | YP_586302 |
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| Protein GI | 94313093 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4258] Predicted exporter |
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| TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.90663 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.139004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGAC CGCTGCTCGT TCGCACCGTC AAATTCGCTA CCGCCCACGC CTGGCTGGTA
ATTGGCATTT CCTTGTTGCT GACCGTTGCC GCAGGCATCT ACGCGGCCCG CAACTTCGCC
ATCAACACCG ATATCAGCCG ACTGCTTGAA TCCGACGCCC CCTGGGCGAA GCACGACCAG
GCCATCAGCG ACGCCTTTCC GCAGCGCGAC AAGATGATCC TCGCCGTGGT GCAGGCCCCA
GCCAAGGAGC TTGCCGATGC GGCCGCCAAT GAACTGGCCG ATGCCCTGCG CAAGCAGCCC
AAGCGCTTCC GCGCGGTCGG GCAGCCCGGT TCGGGCCCGT TCTTCGAACG CAACGGCCTG
TTGTTCGCAG ATACCGCGAG CGTCAACGAC ATGGCCGAGA AACTCACGCA GGCCCGGCCG
CTGCTCAACA ATCTCGCGCA CGATCCCACG TTGCGCGGCC TGTCGGACCT GCTGACCACC
ACGCTGGCGC TCCCCTTGCA GCTCGGACAG ATCAAGCTGG GCGACATGGA AAAGCTGCTC
CAGACGAGCG CGAATACCGT CGACGGCGTG CTGGCCGACC ATACGGTGGC CCTGTCGTGG
GCCGGATTGG TCGACGACAG CCTCAAGGCC AACGCCGACG GCAACGCGTA CAGTTTCGTG
ACGCTGTCGC CGGTGCTCGA TTTCAGCGAC CTGCAAGCCG GCTCTGGCGC CAGCGACGCG
ATCCGCACCG CGGCCACCGA ACTCAAGCTT GCCGAACGCT ACAGCGCCGT GGTGCGACTG
ACCGGCCCGC AGCCCCTGGC CGACGACGAA TTCTCGTCGG TCAGCGAAGG CGCCGCGCTC
AATGGCATCC TCACGTTGGT CGTCGTGATC GGCATCCTGT GGATGGCGCT GCGTTCCGCG
CGGCTGATCA CGGCTGTCCT TGTCAGCCTG ATCTCCGGGC TCATCATCAC TGCCGCACTG
GGCCTGCTGA TGGTTGGCGC GCTGAACATG ATTTCCGTGG CGTTCGCGGT GCTTTTCGTC
GGCCTGGGTG TCGACTTCGG CATCCAGTTC GGCGTGCGTT ACCGAGCAGA GCGGCACGAG
CATGACGACA TCAACAAGGC GCTGGAGCTG GCGGCCCGCG ACGTCGCAGG CCCGCTCACG
CTGGCCGCGG CTGCCACCGC CGCGGCGTTC TTCTGTTTCC TGCCCACCGA CTACCGCGGC
GTGGCCGAGC TTGGCAAGAT CGCCGGCGTC GGCATGTTCA TCGCCTTTGG CACCACCTTC
ACGCTGCTGC CGGCCATGAT CCGCGTGCTG GCCCCGCCGG GCGAGGACGA AGTGCCGGGC
TTTGCCTGGC TGGCCCCGGC CGATTCCTTC TTCGAACGCC ATCGCAAGGG CACGCTGGTC
GGCGTGCTGG CGGTGCTGAT CGCGGGCGCG CCGCTGCTGC CGCACCTGCG TTTCGATTTC
GACCCGCTGC ACCTGAAGGA CCCTGACTCC GAATCGATGT CGACGCTGCT CGCGCTCAAG
GATGCGCCGC AAGCCGGTAC CGACAACGTC AGCGTGCTCG CCCCGTCCGT GGCGGCAGCC
CAGCAGATCG CCACGCGGCT CAAGACGCTG CCGGAAGTCG AGCGCGTGGT CACGCTGAAG
ACGTTCATTC CGGATGACCA GCCTGCCAAG CTGGCCATTG TCGCCGGCAT GGCGAAGAGC
CTGATGCCCG TGCTGACGCA AACGCGCTCG CAGCCGGCCG AGGACGTGCG CCGCGTGGCA
TCGCTGCGCA ACGCTTCGCG CCAGCTCGCG CTGGCCGCCG AGGATCACCC CGGCCCGGGC
GCGGCTGCAG CCGACCATCT GTCGCAAGCG CTCAAGAAGC TGGCCGATGC GCCGGCCGCC
ACGCGCGACC GTGCGGAACA GGCCATTGCG CTGCCGCTGC AACTGGCACT GGCCTCGCTG
CAGAACGCGC TGCAGCCCGA GCCGATCTCG CAGCAGACGC TGCCGCCCGA ACTGGTCCGC
GACTGGCTCG CGCCCGATGG TCAGGCACTG GTCAGCGTCA GCCCGAAGCT GCCCCCGCCC
GGCGCGAAGA ACGATGACGC CCGCGAAGCG GCGCTGAACC AGTTTATCGA CGTGATGGCG
CGCGTGCAGC CGGACGCCAC CGGCGGCCCG ATCGCGATCC GCGGATCGGC CGACACGATC
ATGACCGCGT TCCTGCACGC CGGCGTGTTG GCGGTGATCT CGATCACGGT GCTGCTGTGG
ATCACGCTGC GGAGCGTCGG CGATGTGCTG CGGACGCTGA TCCCGCTGCT GGTTTCCGGC
CTCGTGACGC TCGAACTCTG CGTGGTGTTC GGCATCGCGC TGAACTTCGC CAATATCATC
GCGCTGCCGC TGCTGCTGGG CATTGGCGTG GCCTTCAAGA TCTACTACGT GATTGCCTGG
CGCCATGGCA AGACCAAGCT TCTGCAGTCG AGCCTGACCC ACGCCGTGCT GTTCAGCGCC
GCCACCACGG CGACGGCGTT CGGCAGCCTC TGGCTGTCGC ACCACCCGGG CACTGCGAGC
ATGGGCAAAC TGCTGGCGCT GGCGCTGGCG TGCACGCTGG CTGGCGCGGT GTTCTTCCAG
CCGATCCTGA TGGGACGCCC GCGCCGTCAG CCGTCGGGAC GCGCCGAACC GCTCGGCCCG
TCGCTGCCCC CGCTCTCGGT AGCCGCGTCC ATGTCACAAT CTTCCGATAA CACAGCGGGG
CCGGATCAAC GCCACCCAGG AAGGTAG
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| Protein sequence | MIRPLLVRTV KFATAHAWLV IGISLLLTVA AGIYAARNFA INTDISRLLE SDAPWAKHDQ
AISDAFPQRD KMILAVVQAP AKELADAAAN ELADALRKQP KRFRAVGQPG SGPFFERNGL
LFADTASVND MAEKLTQARP LLNNLAHDPT LRGLSDLLTT TLALPLQLGQ IKLGDMEKLL
QTSANTVDGV LADHTVALSW AGLVDDSLKA NADGNAYSFV TLSPVLDFSD LQAGSGASDA
IRTAATELKL AERYSAVVRL TGPQPLADDE FSSVSEGAAL NGILTLVVVI GILWMALRSA
RLITAVLVSL ISGLIITAAL GLLMVGALNM ISVAFAVLFV GLGVDFGIQF GVRYRAERHE
HDDINKALEL AARDVAGPLT LAAAATAAAF FCFLPTDYRG VAELGKIAGV GMFIAFGTTF
TLLPAMIRVL APPGEDEVPG FAWLAPADSF FERHRKGTLV GVLAVLIAGA PLLPHLRFDF
DPLHLKDPDS ESMSTLLALK DAPQAGTDNV SVLAPSVAAA QQIATRLKTL PEVERVVTLK
TFIPDDQPAK LAIVAGMAKS LMPVLTQTRS QPAEDVRRVA SLRNASRQLA LAAEDHPGPG
AAAADHLSQA LKKLADAPAA TRDRAEQAIA LPLQLALASL QNALQPEPIS QQTLPPELVR
DWLAPDGQAL VSVSPKLPPP GAKNDDAREA ALNQFIDVMA RVQPDATGGP IAIRGSADTI
MTAFLHAGVL AVISITVLLW ITLRSVGDVL RTLIPLLVSG LVTLELCVVF GIALNFANII
ALPLLLGIGV AFKIYYVIAW RHGKTKLLQS SLTHAVLFSA ATTATAFGSL WLSHHPGTAS
MGKLLALALA CTLAGAVFFQ PILMGRPRRQ PSGRAEPLGP SLPPLSVAAS MSQSSDNTAG
PDQRHPGR
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