Gene Rmet_4148 details

Gene Information

• Locus tag: Rmet_4148
• Symbol: sqhC
• ID: 4041006
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cupriavidus metallidurans CH34
• Kingdom: Bacteria
• Replicon accession: NC_007974
• Strand: -
• Start bp: 722723
• End bp: 724732
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637979571
• Product: squalene-hopene cyclase
• Protein accession: YP_586284
• Protein GI: 94313075
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.146424
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.598571
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACCAGG CCGCAACAAT AACCCGCCCC CAGGATGAAA CGCTGACCAC CAGCGCCCGT 
CGCCCTGCCC AGCCGGCCCT GCCCGATCCG CTCGATGCCG GCATCGCCCA TGTCGTCGAA 
TCCCTGCTGG CGCAACAGCA GTCCGATGGC CACTGGGTCT ACGAACTCGA AGCCGACGCC 
ACGATTCCGG CCGAGTACAT CCTGATGGTC CACTACCTCG GCGAGACGCC GGATCTGGTA 
CTGGAAGGCA AGATCGCCAA CTACCTGCGC CGCATCCAGA ACGCCGATGG CGGCTGGCCG 
CTGTTCCACG CCGGCGCCTC GGACATCAGT GCCAGCGTGA AGGGCTACTT CGCGCTGAAG 
ATGGCCGGCG ACAACCCGGA AGCCGAACAC ATGCGCCGCG CGCGCGCCGC GATCCACGCG 
ATGGGCGGCG CCGAGGCCAG CAACGTATTC ACGCGCACGC TGCTCGCGCT GTACGGCGTG 
ATGCCGTGGC AGGCGGTGCC GATGATGCCG GTGGAGATCA TGCTGCTGCC CGAGTGGTTT 
CCGTTCCATC TGTCGAAGGT GTCGTACTGG GCCCGCACGG TCATCGTGCC GCTGCTGGTG 
CTCAACAGCC TGCGTCCGCA GGCGCGCAAT CCGCGCAAGA TCGGCATCGA CGAATTGTTC 
GTACGCCCGT GCCAGGCCAC CCGCCTGCCG CGCCGCGCGC CGCACCAGAG CCCGCTATGG 
GTCGGCGTGT TCCGCACGCT CGACGCCGTG GTGCGCATGG CCGAGCCACT GTTCCCGCGT 
GGCCTGCGCC AGCGGGCCAT CGAGCGCGCG CGTGAATTCA CGGTCGAACG GCTGAACGGC 
GAAGACGGCC TCGGCGCGAT CTTCCCGGCG ATGGTCAACT CAGTGCTGAT GTTCGACGTC 
CTCGGCGTGC CCGAGAGCGA CCCGAACCGG GCCATCGCCC GCCGCTCGAT CGACAAGCTG 
CTCGTGATCA AGGATGACGA GGCTTACTGC CAGCCATGCC TGTCGCCGGT CTGGGATACG 
TCGCTGGCCG CCCATGCCTT GCTGGAAGTC GGCGAGCCGC GCACGATCGC GGCTGCGGCA 
CGCGGGCTGG ACTGGCTGCT GCCGCTGCAG GAACTCGAAC TGCGCGGCGA CTGGACGGTG 
CGCCGTCCCA ACGTCCGCCC GGGCGGCTGG GCTTTCCAGT ACGCCAACCC TCACTACCCC 
GACGTGGACG ACACCGCCGT GGTGGCTGCC GCGATGGACC GGGTGGACAA GGGCGACCGC 
TCCAACCGTT ATGACGAGGC CGTATCCCGC GCCTGCGAGT GGATCGTCGG CATGCAAAGC 
AGCAACGGTG GCTGGGGCGC GTTCGAACCC GAGAACACGC ACCTTTACCT GAACAACATC 
CCGTTCGCCG ATCACGGCGC GCTGCTCGAT CCGCCCACGG CCGACGTGTC CGCGCGTTGT 
CTGGCGATGC TGTGCCAGCT AGGCCAGATG CCGGCCAACA GCGAGCCGGC CGCGCGCGCG 
CTGCGCTACC TGCTCGACGA ACAGGAAGCC GACGGAAGCT GGTTCGGCCG CTGGGGCACC 
AACTATATCT ATGGCACGTG GAGCGCGCTG TGCGGGCTGA ACGCCGCCGG CATCGGCACG 
GACGCGCCCG AGATGAAGCG CGCGGCCCAA TGGCTGCTGT CGATCCAGAA CGAGGATGGC 
GGCTGGGGCG AGTCGGGCGA CAGCTACAAG CTCGAGTATC GGGGCTATGA AAAGGCGCCG 
AGCACGGCAT CGCAAACCGC CTGGGCCATG CTCGGCCTGA TGGCCGCCGG CGCAGGCGAC 
CACCCCGCCC TGGTGCGCGG CGTCGAGTAC CTGCTGCGCA CGCAGGCCAG CCATGGTTTC 
TGGGACGAGC CGTACTTCAC GGCGGTGGGT TTCCCTCGCG TGTTCTATCT GCGCTACCAC 
GGCTATTCGC GCTTCTTCCC GCTCTGGGCA CTGGCGCGCT TCCGCAACCT GCTGCGCGAT 
GGCAATCGCG CCATCTCCTG GGGGCTCTGA 

 

Protein sequence

MNQAATITRP QDETLTTSAR RPAQPALPDP LDAGIAHVVE SLLAQQQSDG HWVYELEADA 
TIPAEYILMV HYLGETPDLV LEGKIANYLR RIQNADGGWP LFHAGASDIS ASVKGYFALK 
MAGDNPEAEH MRRARAAIHA MGGAEASNVF TRTLLALYGV MPWQAVPMMP VEIMLLPEWF 
PFHLSKVSYW ARTVIVPLLV LNSLRPQARN PRKIGIDELF VRPCQATRLP RRAPHQSPLW 
VGVFRTLDAV VRMAEPLFPR GLRQRAIERA REFTVERLNG EDGLGAIFPA MVNSVLMFDV 
LGVPESDPNR AIARRSIDKL LVIKDDEAYC QPCLSPVWDT SLAAHALLEV GEPRTIAAAA 
RGLDWLLPLQ ELELRGDWTV RRPNVRPGGW AFQYANPHYP DVDDTAVVAA AMDRVDKGDR 
SNRYDEAVSR ACEWIVGMQS SNGGWGAFEP ENTHLYLNNI PFADHGALLD PPTADVSARC 
LAMLCQLGQM PANSEPAARA LRYLLDEQEA DGSWFGRWGT NYIYGTWSAL CGLNAAGIGT 
DAPEMKRAAQ WLLSIQNEDG GWGESGDSYK LEYRGYEKAP STASQTAWAM LGLMAAGAGD 
HPALVRGVEY LLRTQASHGF WDEPYFTAVG FPRVFYLRYH GYSRFFPLWA LARFRNLLRD 
GNRAISWGL