| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4043 |
|---|
| Symbol | tniQ |
|---|
| ID | 4040901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 608945 |
|---|
| End bp | 610162 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637979467 |
|---|
| Product | transposon related protein TniQ (Tn6048) |
|---|
| Protein accession | YP_586180 |
|---|
| Protein GI | 94312971 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.705627 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.297499 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCCAG CGCCACGCTG GCCACTGCAT CCGGCCCCCA GAGAAGGCGA AGCCTTGTCT
TCGTGGCTCA ACCGCGTGGC CCTTTGCTAT CACATGGAGG TGTCCGAGCT GCTGGAGCAC
GATCTTGGTC ACGCTCAGGT TGATGACCTG GATACCGCGC CACCACTGGC GCTGTTGGCG
ATGCTCTCCC AGCGGAGCGG CATCGAGCCG GACCGGCTGC GTTGCATGAG TTTCGCCGGC
TGGGTGCCTT GGCTACTGGA CAGCCTTGAT GATCAGATTC CAGACGCATT GGAAACCTAT
GCGTTCCAGC TCTCGGTGCT GCTGCCGAAA CTCCGCCGTA GGACGCGATC CATCACGAGC
TGGCGTGCCT GGCTGCCCAG CCAGCCGATA CATCGCGCCT GTCCTCTCTG TCTGAACGAC
CCGGCAAACC AAGCCGTACT GCTTGCATGG AAGCTGCCCC TGATGCTGAG CTGCCCGCTG
CATGGCTGCT GGCTGGAATC CTATTGGGGC GTGCCTGGGC GGTTTCTCGG CTGGGAGAAC
GCCGACACTG CGTCGCGCAC CGCCAGCGAC GCGATTGCAG TGATGGACCG GCGTACCTGG
CAGGCACTGA CGACCGGCCA TGTGGAACTG CCGTGCCGAC GCATCCACGC TGGATTGTGG
TTTCGACTGC TACGCACGCT GCTCGATGAG CTGAACACCC CGCTTTCGGC GTGCGGAACC
TACGCGGGGT ATCTCCGCCA AGTCTGGCAA GGCTGCGGGC ATCCGCTGCG TGCTGGGCAA
AGTCTGTGGC GACCGTATGA AACCCTGAAC CCGGCAATAC GGTTGCAGAT GCTGGAGGCG
GCGGCAACGG CAATCAGCTT GATCGAGGTG AGGGATATCA GCCCGCCAGG CGAGCATGCA
AAGCTGTTCT GGTCCGAGCT CCAAACCGGG TTCACCAGTG GTCTGCCGGC GAAACCGCCG
AAGCCCGAAC CCGTCAATCA TTGGCAACGG GCGGTCCAAG CTATCAGTGA GGCGATCATT
GAAGCCCGGC ACGACCCCGA GACGGCACGC TCGCTGTTCG CGTTGGCTTC CTATGGTCGG
CGCGATCCCG CTTCCCTGGA ACAGTTGCGC GCCACCTTTG CAAAGGAAGG CATTCCCCCG
GAATTTCTGT CACATTACGA GGCTGATGGA CCCTTTGCAT GTCTTAGACA GAATGACGGG
TTAAGTGACA AATTTTGA
|
|---|
| Protein sequence | MKPAPRWPLH PAPREGEALS SWLNRVALCY HMEVSELLEH DLGHAQVDDL DTAPPLALLA
MLSQRSGIEP DRLRCMSFAG WVPWLLDSLD DQIPDALETY AFQLSVLLPK LRRRTRSITS
WRAWLPSQPI HRACPLCLND PANQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN
ADTASRTASD AIAVMDRRTW QALTTGHVEL PCRRIHAGLW FRLLRTLLDE LNTPLSACGT
YAGYLRQVWQ GCGHPLRAGQ SLWRPYETLN PAIRLQMLEA AATAISLIEV RDISPPGEHA
KLFWSELQTG FTSGLPAKPP KPEPVNHWQR AVQAISEAII EARHDPETAR SLFALASYGR
RDPASLEQLR ATFAKEGIPP EFLSHYEADG PFACLRQNDG LSDKF
|
|---|
| |