| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3837 |
|---|
| Symbol | hmvB |
|---|
| ID | 4040532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 379278 |
|---|
| End bp | 380495 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637979258 |
|---|
| Product | heavy metal cation tricomponent efflux membrane fusion protein HmvB |
|---|
| Protein accession | YP_585976 |
|---|
| Protein GI | 94312767 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.613806 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCGCA TCCCTGATAT GCCGCTCATC TCCCGCGATT CCCGCTTCAC CCGTGCCGGC
GCCGCGCGTC TGGCGGCCGT GCTGTCACTG TGCGTCCTTA CGCTGGGCGC CTGCGGCAAG
AAGGAAGCGC CCGAGAACGA CGACGAGCCG AAGGTGGCTG GTCAGGTCAT CGAGTATCCG
GCGAGCGTCA GGTCGCTGCC CGGCGTCGTC GGCCAGCCGG TCAAGAGCGG CGGCGATCGG
ATGCTGAGCA TGCCCGGCCG TCTGGTCTGG AACGAGGACA AGACGGTGCG CGTGGCTTCG
CCGTTCGCCG GCCGCGTGAT GGAGATTCTG GTGCAGCCCG GCGCCACCGT GAAGGCAGGC
CAGCCGCTGG CGATGCTGAC GTCGCCCGAT TTTGGCTCGG CGCAGGCCGA TGCCCGCAAG
GCGTCCGCGG ATAGCGCCGT GGCGTCGAAG GCGCTGGCGC GCCAGCGCGA GCTGTATGAG
GCCGGGGTCA TCGCCCAGAA GGATCTGGAG CAGGCGCAGG CGGACAACGC GCGCGCCGCG
GCTGACCAGC AGCGCACGCA GGCAGCGCTG CGCATGTACG GCGCTTCCGG CAGCGACGGC
GTGAACCAGC GTTTTGCGCT GCGCAGCCCG ATCGACGGCC TGGTGGTCGA GCGCAATATC
AATCCGGGGA TGGAACTGCG TCCCGACCAG CCGCCCACCG CACCGCTGTA CCTGATCACC
GATCCCACGA CGCTGTGGGC ACAGCTCGAT GCCGCCGAGG CGGACCTTGG CCACTTCAGG
CCCGGCGTGA CCGTGCAGCT TGCCAGCGCC GCTTACCCCG GCGAGACGTT CACGGGCACC
GTGGTCAAGA TCGCGGATTA CGTTGATCCG TCGTCGCGCA GCGTCAAGGT GCGTCTGTCC
GTGCCGAATG CCGACCGCCG CCTGAAGGCC GAGATGTTCG TTACGGCGAA GATGCAGGCC
GCGTCGTTCC AGGGGATCTC GGTGCCGTCG AAGGCCGTGT TCCTGGCCGA CAACAAGAAC
TATGTGTTCG TGCGAACCAC GCCTAACAGG TTCGAGCGCC GCGAGGTCAA GCTCGGCGTG
ACGATTCCGG GCACGACCGA GGTGGTGGAA GGCCTGAAAG AGGGCGACGT GGTGATCACC
GACGGCAATC TCTATCTGCA GGACATCCTG CGCGATGCCA CCGCGGTGAA TGCCGCGCGT
GCGACTGCCA AGCATTAA
|
|---|
| Protein sequence | MHRIPDMPLI SRDSRFTRAG AARLAAVLSL CVLTLGACGK KEAPENDDEP KVAGQVIEYP
ASVRSLPGVV GQPVKSGGDR MLSMPGRLVW NEDKTVRVAS PFAGRVMEIL VQPGATVKAG
QPLAMLTSPD FGSAQADARK ASADSAVASK ALARQRELYE AGVIAQKDLE QAQADNARAA
ADQQRTQAAL RMYGASGSDG VNQRFALRSP IDGLVVERNI NPGMELRPDQ PPTAPLYLIT
DPTTLWAQLD AAEADLGHFR PGVTVQLASA AYPGETFTGT VVKIADYVDP SSRSVKVRLS
VPNADRRLKA EMFVTAKMQA ASFQGISVPS KAVFLADNKN YVFVRTTPNR FERREVKLGV
TIPGTTEVVE GLKEGDVVIT DGNLYLQDIL RDATAVNAAR ATAKH
|
|---|
| |