| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3589 |
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| Symbol | |
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| ID | 4040438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 3896887 |
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| End bp | 3900039 |
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| Gene Length | 3153 bp |
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| Protein Length | 1050 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637979007 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_585730 |
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| Protein GI | 94312520 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.421189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAGT TTTTCATCGA CCGGCCGGTG TTCGCGTGGG TGCTCGCGCT GATCATCGTG
CTGGGCGGGG CACTCGCGAT CCTGCAATTG CCGATCGCGC AGTACCCCAA TATCGCGCCC
CCGATCATCA CGGTCAGCAC GACCTACCCT GGTGCATCGG CCAAGACCAT TGAAGACACG
GTGGTGACGC CGATCGAGCA GGAGCTCAAC GGCGCGCCGA ACCTGCTCTA TTACGAGTCG
CAGAGCGAGT CGTCCGGCCT GGCCACGATC AACATCTCGT TCGCGCCGGG CTCGAGTTCC
GACCTGAACT CCGTGGAAGT GCAGAACCGC CTGAAGCGCG TGGAAGCGCG TCTGCCCGCG
GAAGTGCGCC AACAGGGTGT GAAGGTCGAC AAGGCCGGCA ACAACTACAT GATGTTCATC
ACGGTCTCGT CCAAATCCGG TAACTCGGAT GCGATCGAGC TCGGTAACTT CGTGTCCGCG
CAGGTCGTCG ACTCGATCCG TCGCGTGCCC GGCGTGGGTG CGGCCGACCT GTTCGGTACC
GAATACGCGA TGCGGATCTG GCTGGATCCG GCCAAGCTGA CCGGCTACAA CCTCACGCCG
CTCGACGTGA AGGCCGCAGT GGCCGAGCAG AACATCCAGG TTGCCGTGGG CGAACTGGGC
GGGACCCCGT CGCCTTCTGG CACCGAGCTT AACGCCACGG TGAGTACCGA AAGCCGCCTG
AACACGCCCG AGGAATTCGC CAACATCCTG TTGCGCGTGA ATCCGGACGG TTCGTCGGTG
CGCATCAAGG ACGTCGGCCG CGTGGAACTG GGCGGCGCCG ACTACTCGAC GCTCGCCCGC
ATCAACGGCA AGCCGGCCTC GGCCATCGCC ATCAAGCTGG CCCCGACCGG CAACGCGCTG
GCCACCGCCA CCGCGGTGCG CGCCAAGATG GAAGAGCTTT CGCGTTTCTT CCCGCCGGAC
TACGAGTTCA GCGTGCCTTA CGACACCTCG GCCTTCGTGA AGATCTCGAT CGAGGAAGTG
GTCAAGACGC TGCTGGAAGC CGTGGTGCTG GTGTTCCTGG TGATGTACCT GTTCCTGCAG
AACTTCCGCG CGACGCTGAT CCCGACGCTG GTGGTGCCGG TGGCGCTGCT TGGCACGTTC
GGCGCGATGC TGGCGTTCGG CTTCTCGATC AACGTGCTGA CAATGTTCGG CATGGTGCTG
GCGATCGGTA TTCTGGTCGA CGATGCCATC GTGGTGGTCG AGAACGTCGA GCGGATCATG
AGCGAGGAAG GACTCTCGCC ACGTGAAGCC ACGCGCAAGG CGATGGGACA GATCACGGGC
GCCATCATCG GCATTACGCT GGTGCTGACG GCGGTGTTCA TCCCGATGGC GTTCTTCTCG
GGCTCTGTCG GCAACATCTA TCGCCAGTTC TCGCTGTCTC TGATTGCTTC GATGGGCTTC
TCGGCGCTGC TGGCCCTGAC GCTGACCCCG GCACTGTGCG CCACCATGCT CAAGCCGGTG
GAAGCAGGCC ATCACCACGA GAAGAAGGGT TTCTTCGGCT GGTTCAACCG TACTTTCACC
ACGGCATCTG GCAGCTACCA GGGCATGATT GCGCGCATTC TCAAGCGCAC GGGCCGTTAC
GTGATCATCT ACCTGGTGAT CATCGCCGGG GTGGTGGTGC TGTTCAAGCG CCTGCCGTCG
TCGTTCCTGC CCGATGAGGA CCAGGGCTAC ATGATCACCG TGGTGCAGTT GCCCACGGGC
GCGACGCAAG AGCGCACGAT CGGCGTGCTC AAGCAGATCG AGGACTACTA CCTGCAGAAG
GAATCGAAGG TGGTGGACCA GATGATCACG GTGGCGGGCT TCTCGTTCTT CGGCCGCGGC
CAGAACGGCG GTATCGCGTT CGTGCGTCTG AAGGACTGGA AGGAGCGTCC GGGCGCGGAT
CAGACCGCGC AAGCGCTGGT GGGCCGTGCG TTCGGCGCGC TGTCGTTTAT CAAGGACGCG
ATCATCTTCC CGCTGAACCC GCCGGCCATC TCCGAACTGG GTAACTCGTC GGGCTTCGAC
TTCCGTCTGC AGGACCGCAG CGGTCAGGGC CACGCGAAGC TGATGGAAGC GCGTAACCAG
ATGCTGGGCA TGGCGGCGCA GTCGCCGGTG CTGCAAGGCG TGCGTCCGGA AGGTCAGGAA
GACGCGCCGC AGTTGCGCAT CGACATCGAT CGCGAAAAGG CGCGCGCGCT GGGCGTATCG
GTGGCCGATA TCAACTCGAC GCTGTCGATC GCGTTTGGCT CCTCGTACGT GAACGACTTC
ATCTATGAGG GTCGCGTGCG CCGTGTGATC GTGCAGGCCG AAGGTGCGGA TCGCCGCCTG
CCGGACGATC TGACCAAGCT GCGCGTGCGC AATGCCAATG GCGACATGGT GGCGTTTGCC
GCGTTCGCGA CGTCGAAGTG GATCATGGGT TCGCCGCGCC TGGAGCGTTA CAACGGCATG
CCGGCCGTGA AGCTCGCGGG CCAGGCCGCG CCGGGCAAGT CCACTGGCGA GGCCATGCGC
GTGATGGAGG AAAACTTCGC CAAGCTGCCG CCGGGCTTCG GTTTCGAGTG GTCGGGTCAG
TCGTATGAAG AGCGCCTGGC CGGCTCGCAG GAACCGATCC TGTACACGCT GTCGCTGGTG
ATCGTGTTCC TGTGTCTGGC CGCGCTCTAT GAGAGCTGGT CGATTCCGGT AGCCGTGCTG
CTGGTGGTGC CGCTGGGTGT GATCGGCGCG CTGCTCGGCG TGACGCTGCG TGGCATGCCG
AACGACGTGT ACTTCAAGGT GGGCCTGATC GCGACGATCG GTCTGTCCGC CAAGAACGCC
ATTCTGATCG TGGAATTTGC CAAGGACCTG CAGGCGCAGG GCCGTAGCCT CGTGGATGCG
ACGCTCGAAG CGGTGCACCT GCGGTTCCGC CCGATCCTGA TGACGTCGAT GGCATTTATT
CTGGGCGTGC TGCCGCTGGC GATTGCCACT GGCGCGGGCT CGGGCAGCCA ACGCGCGATC
GGTACCGGCG TGATGGGCGG GATGATCACG GCAACGCTGC TGGCGATCTT CCTGGTGCCG
GTATTCTTCG TGGTGGTGCG TAGCCGCTTC AAGGGCAGCA AGGCCCAGCA CGAGCGGGAA
ATGGCACGCC TGGAAAGCCA GAAGGAAATC TGA
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| Protein sequence | MAKFFIDRPV FAWVLALIIV LGGALAILQL PIAQYPNIAP PIITVSTTYP GASAKTIEDT
VVTPIEQELN GAPNLLYYES QSESSGLATI NISFAPGSSS DLNSVEVQNR LKRVEARLPA
EVRQQGVKVD KAGNNYMMFI TVSSKSGNSD AIELGNFVSA QVVDSIRRVP GVGAADLFGT
EYAMRIWLDP AKLTGYNLTP LDVKAAVAEQ NIQVAVGELG GTPSPSGTEL NATVSTESRL
NTPEEFANIL LRVNPDGSSV RIKDVGRVEL GGADYSTLAR INGKPASAIA IKLAPTGNAL
ATATAVRAKM EELSRFFPPD YEFSVPYDTS AFVKISIEEV VKTLLEAVVL VFLVMYLFLQ
NFRATLIPTL VVPVALLGTF GAMLAFGFSI NVLTMFGMVL AIGILVDDAI VVVENVERIM
SEEGLSPREA TRKAMGQITG AIIGITLVLT AVFIPMAFFS GSVGNIYRQF SLSLIASMGF
SALLALTLTP ALCATMLKPV EAGHHHEKKG FFGWFNRTFT TASGSYQGMI ARILKRTGRY
VIIYLVIIAG VVVLFKRLPS SFLPDEDQGY MITVVQLPTG ATQERTIGVL KQIEDYYLQK
ESKVVDQMIT VAGFSFFGRG QNGGIAFVRL KDWKERPGAD QTAQALVGRA FGALSFIKDA
IIFPLNPPAI SELGNSSGFD FRLQDRSGQG HAKLMEARNQ MLGMAAQSPV LQGVRPEGQE
DAPQLRIDID REKARALGVS VADINSTLSI AFGSSYVNDF IYEGRVRRVI VQAEGADRRL
PDDLTKLRVR NANGDMVAFA AFATSKWIMG SPRLERYNGM PAVKLAGQAA PGKSTGEAMR
VMEENFAKLP PGFGFEWSGQ SYEERLAGSQ EPILYTLSLV IVFLCLAALY ESWSIPVAVL
LVVPLGVIGA LLGVTLRGMP NDVYFKVGLI ATIGLSAKNA ILIVEFAKDL QAQGRSLVDA
TLEAVHLRFR PILMTSMAFI LGVLPLAIAT GAGSGSQRAI GTGVMGGMIT ATLLAIFLVP
VFFVVVRSRF KGSKAQHERE MARLESQKEI
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