| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2896 |
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| Symbol | |
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| ID | 4039724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 3152393 |
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| End bp | 3153037 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637978296 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_585038 |
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| Protein GI | 94311828 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.438236 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTGA TCGCGCTAAA CAAACCCTAC CAGACCATGA GCCAGTTCTC AGCGCACCCC
TCGCGCGCGA CGCTGGCTGA CTGTGTCGAT GTGCCTGGTG TCTATCCTGC CGGCCGGCTC
GATGCCGACA GCGAAGGCCT GCTGCTGCTC ACCGACGATG GCGCGCTGCA GGCACGCATC
GCCGATCCGC GACACAAGCT CGTCAAGACG TACCTCGCTC AGGTGGAAGG TGTTCCAGAC
GAGGCTGCGC TTGCCACCCT TCGCACCGGC GTGGACCTGG GAGATTTCAA GACGCTGCCA
GCAAAGGCGC GCGTCGTCGA TGAGCCGGCA TGGTTGTGGG AGCGCCATCC TCCGATCCGC
TATCGCGCAG CCATTCCCAC TACGTGGATC GAGTTGTCGA TTCGCGAAGG CAAGAACCGA
CAGGTGCGCC GCATGACTGC CGCGGTGGGG CTCCCCACGC TTCGACTCGT CCGCATATCT
ATTGGCAATC TGAAACTGCC GGAGCTGGGA CTGATGCCCG GCCAATGGTG CGAAACAGAT
GTCTCGAGAC TAGGACTTTC AAGCGGCAAT CCGCATGTTT CGACTGCAAG ACCTGAGCGC
GCGCCCACAT CGGGACCGGC AAGACGCAGT TACAAATTCA AGTAA
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| Protein sequence | MTLIALNKPY QTMSQFSAHP SRATLADCVD VPGVYPAGRL DADSEGLLLL TDDGALQARI
ADPRHKLVKT YLAQVEGVPD EAALATLRTG VDLGDFKTLP AKARVVDEPA WLWERHPPIR
YRAAIPTTWI ELSIREGKNR QVRRMTAAVG LPTLRLVRIS IGNLKLPELG LMPGQWCETD
VSRLGLSSGN PHVSTARPER APTSGPARRS YKFK
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