| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2390 |
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| Symbol | |
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| ID | 4039210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 2600281 |
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| End bp | 2602242 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637977786 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_584536 |
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| Protein GI | 94311326 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00175562 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000318804 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTCCAG AAATCGGCCA CCTCGCCCTC ATCGCTGCCT TGTTCGTGGC ACTCGCTCAA
GGTGTTCTTG CCCTGGCCGG CGCGGCGCGA GCCAACCTCA CCTGGATCGC GTTCGCCCGC
CCCGCTGCAC GCGCTCAATT CCTGTTGGTG ATGGTCGGTT TTGCCGCGCT CACCTGGGCC
TTTGTCGCGA AGGACTACTC GGTCGCCTAC GTCGCTCAAA ACTCCAATTC TCAGCTCCCG
CTGGGCTACA GAATGGCCGC GGTCTGGGGC GGACATGAGG GTTCGCTCCT GCTCTGGCTG
CTGATGCAGA CCGGCTGGGC CTATGCGGTC AGCCGGTTGT CGAAACAGCT TCCGGATGCC
ATGGTGGCGC GCGTTCTGGG CGTGCTCGGC CTGGTGACGG CCGGCTTCCT GCTGTTCGTC
CTGTTGACCT CCAATCCCTT CGAGCGACTT TTCCCGGTAC CGCAAGATGG ATGGGATCTG
AATCCGCTCC TGCAGGATAT CGGCTTGATC TTTCATCCAC CGCTGCTTTA CATGGGGTAC
GTCGGATTTT CGGTGGCCTT CGCATTCGCG ATTGCTGCAT TGCTTGCCGG ACAACTGGAC
TCGACGTGGG CACGCTGGTC TCGTCCCTGG GCCACCGCAG CCTGGGCAAA TCTGACGGTC
GGAATCGCCT TGGGGAGTTG GTGGGCCTAC TACGAGTTGG GCTGGGGGGG CTGGTGGTTT
TGGGACCCGG TCGAGAACTC GTCGTTCATC CCCTGGCTGG TGGGCACCGC CTTGATCCAC
TCTTTGGCGG TGACGGAAAA GCGGGCCAGT TTCAAGAACT GGACGGTGCT GCTCTCGATC
GGCGCATTTT CTTGCTCGCT TTTGGGTGCC TTTCTGGTGC GCTCGGGCGT ACTGACTTCT
GTGCATGCAT TTGCCACCGA TCCGCGACGC GGGTTATTCA TTCTGATTCT GCTGACGGTC
ATTGTGGGCA CGTCGCTCGC TTTGTTCGCA TGGCGAGCCC CTAAGGTCGG CATGGGAGGA
CGGTTCGACA TGGTCTCCAG GGAGTCCTTG CTGCTGGTCA ACAATGTGCT GTTGGTCGTC
ACTGCCGGCG CTGTCGCGCT CGGTACGCTG TACCCACTGC TCGTCGATGC GCTGGGCCTG
GGCAAGCTCT CCGTGGGGCC GCCATACTTC AATGCGGTGT TCGTGCCATT GATGATCCCC
GCGTTGCTTC TGATTGCGGT AGGACCCGCC GCCAATTGGA AGGCCGCCCA GTTCGGTGCC
ATCTTCAGGC AGTTGCGCGT GCCGATGATT GCTGCACCCC TGGTGGGCCT GACCGCCCCG
TTCGTGCTGG GGCACTGGTC AGCTTCTGCG GCGTTGGGCT TGATGCTCGC CACGTGGATT
GCGGTGTCGG TGGTGACGGG CATCTTCGGC CGAATGCGCG CCACCCGCGG CGGGTTGCGT
GCCCAGCCAC GCAGTTGGCT TGGGATGCAT ATGGCGCATC TGGGCATCGC GGTATTCGTG
ACTGGCGTGA CCATCGTCAG TGGGTATGAG ACCGAGCGAG ACGTTCGATT GGCCCAGGGC
GAGTCCGTCA GCATCGGCGG CTACGACCTC ACTTTGATCG GCGTCAGAAG CACGCGGGGG
CCCAACTACG TGGCGCAGAT AGGCGATATC GAACTGTCGC GCGACGGCAA GGTCTTGCGT
CGGCTGCATC CGGAAAAGCG CAATTACCCG GCCTCGCAGA TGCCGATGAC CGAGGTGGCG
ATCGATGCAA ACGGACTGCG CCACGTCTAC GCGGCGCTCG GCGAACCGCT CGGCGACGGT
GTTTGGAGCG TTCGTGTCTA CCACAAGCCA TTCGTTGACT GGATCTGGAT CGGCTGCATC
CTGATGGCGC TTGGCGGTGG CTTGGCCATC AGCGATCGTC GATACCGTCT GAAGCCTCGC
CGTCAACACG TCGCTCCGCC ATTGCCCGAG GCCGCATCAT GA
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| Protein sequence | MIPEIGHLAL IAALFVALAQ GVLALAGAAR ANLTWIAFAR PAARAQFLLV MVGFAALTWA
FVAKDYSVAY VAQNSNSQLP LGYRMAAVWG GHEGSLLLWL LMQTGWAYAV SRLSKQLPDA
MVARVLGVLG LVTAGFLLFV LLTSNPFERL FPVPQDGWDL NPLLQDIGLI FHPPLLYMGY
VGFSVAFAFA IAALLAGQLD STWARWSRPW ATAAWANLTV GIALGSWWAY YELGWGGWWF
WDPVENSSFI PWLVGTALIH SLAVTEKRAS FKNWTVLLSI GAFSCSLLGA FLVRSGVLTS
VHAFATDPRR GLFILILLTV IVGTSLALFA WRAPKVGMGG RFDMVSRESL LLVNNVLLVV
TAGAVALGTL YPLLVDALGL GKLSVGPPYF NAVFVPLMIP ALLLIAVGPA ANWKAAQFGA
IFRQLRVPMI AAPLVGLTAP FVLGHWSASA ALGLMLATWI AVSVVTGIFG RMRATRGGLR
AQPRSWLGMH MAHLGIAVFV TGVTIVSGYE TERDVRLAQG ESVSIGGYDL TLIGVRSTRG
PNYVAQIGDI ELSRDGKVLR RLHPEKRNYP ASQMPMTEVA IDANGLRHVY AALGEPLGDG
VWSVRVYHKP FVDWIWIGCI LMALGGGLAI SDRRYRLKPR RQHVAPPLPE AAS
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