| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1944 |
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| Symbol | |
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| ID | 4038749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 2114598 |
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| End bp | 2115428 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637977327 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_584092 |
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| Protein GI | 94310882 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.134668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGCCCG ATCAGTATTG CCAGGACAAG GCCGCCCAGA GCGGCTCCAG CTTCTACTAC
AGTAGCCTGC TTCTCCCCTC CGACCGCCGC AACGCCCTGA CCGCGCTGCA AGCCTGGCGC
CAGGAACTCG ATGCCATCGT CAACGAGAAC CATGACGCCG GCGTAGCCCA TCAGCGCCTG
GACTGGTGGC GCGCGGAATT GCGCCGCCTG TACGACGGGG GGGCAGCCCA CCCGGTCAGC
CAGGCGCTGC AGCCGCATCT GGATGCGCTG CCGCAGGCCG AAATGGCCGA GATGCTCGCC
GCCACCGAGA TGGATTTGGC GCAATCGCGC TATCTGGACG AGATCGGCCT GCTTCGATAC
TGCCGCGCCT CGGGCGGCAC GTTCGGCAAG CTGACGGCCC GCGTGCTTGG CCACACCGAC
CCACGCACGC TCGACGCCGC GGAACAGCTT GGGCTGTCCT TGCAGCGGGT GCGCATTGTG
AAGGATATCG GTGGCGATGC GCGCCACGGC CGCATTTATA TTCCCGTCGA TACGCTGCAA
CGCTTGGAAG TGCCCGCCGC GGACATCCTC CAGTCGCGCC ATTCGGACCG CTTTGTCGCG
CTGATGCGGG AACAGGCCAC GCAAGCCCGC GCGCTGTATG GCGAGGCACT GGCCGCACTG
CCACGCGCCG ATCGTCGGTC TCAGCGTGCC CAGCTGGCCT TCGCGGCCAT TCAGCACGCT
CTTCTGGACG AAATCGAAGC CAGCGACTTC CAGGTCCTGA ACCAGCGCAT CGATCTGACG
CCGATGCGCA AGCTCTGGAT TGCCTGGAAA ACCTGGCTGA AGAATGGCTA A
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| Protein sequence | MTPDQYCQDK AAQSGSSFYY SSLLLPSDRR NALTALQAWR QELDAIVNEN HDAGVAHQRL
DWWRAELRRL YDGGAAHPVS QALQPHLDAL PQAEMAEMLA ATEMDLAQSR YLDEIGLLRY
CRASGGTFGK LTARVLGHTD PRTLDAAEQL GLSLQRVRIV KDIGGDARHG RIYIPVDTLQ
RLEVPAADIL QSRHSDRFVA LMREQATQAR ALYGEALAAL PRADRRSQRA QLAFAAIQHA
LLDEIEASDF QVLNQRIDLT PMRKLWIAWK TWLKNG
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