| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1895 |
|---|
| Symbol | |
|---|
| ID | 4038699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 2062686 |
|---|
| End bp | 2064230 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637977277 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_584043 |
|---|
| Protein GI | 94310833 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGTG CGGAAAGTCT GTTGCGTTCG CTGGTGGCGT GTGGCGTGGA GGTGTGTTTT
GGCAATCCGG GCACGTCGGA GATGCATTTC GTGGCGGCGC TCGATGCGGT GGATGGCATG
CGCCCCGTCC TTGGCCTGTT CGAAGGCGTG GTCACTGGCG CGGCCGACGG CTACGGTCGC
ATGGCAGGAA AGCCTGCCGC CACGCTGCTG CATCTGGGTC CGGGCCTGAC CAATGGCCTG
GCCAACCTGC ACAACGCGCG GCGCGCATCG AGCCCGATCG TCAACATCGT CGGCGACCAT
GCAGCCTCTC ATTCACGCTA CGAGGCACCG CTGACTTCCG ATATCCAGGG ATTCGCGCGG
CCGGTATCGC AATGGATTCA CGCATCCGCA AGCGCGCTGA CGGTTGGCGC CGACGCCGCG
CGCGCCGTGC AAGCGTCGAT GGAGGCACCC GGCCAGGTGG CCACACTGAT CCTGCCTGCG
GATACCGCCT GGAGCCAGGC CGATACCGTC GCGGCGCCGC TGCCGCTGCC GAGTCGGGCG
CCGGTAAGCG GCGCCACCAT TGCGAACATC GCCGCGCTCG TCCAGCGTGG CGTGAAGACG
GCGTTCCTGC TGCGCGGTGA CGCTTTGCAG GAACGGGCCC TGCACGCCGC AGGCAAGATC
GCTGCGAAGA CGGGTGCCCG CCTGCTTTCC GATACGTTCG CCCCGCGCCT GCAGCGTGGC
GCCGGGCGTG TGCCCGTGGA GCGCCTGCCG TACTTCGCCG AGCAAGTCGT GGAATTCCTG
GCTGGCACCG AATTGATCGT GCTGGTCGGC GCGCAGCCAC CGGTCAGCTT CTTCGCCTAC
CCGGACAAAC CAAGCTGGCT GACGCCGGAA GGATGCCGGC TGGCGGTGCT CTCCCATGCG
CACGAGGACG GCACCGGCGC GCTGAAAGCG CTGGCCGACG TGCTCGGCGC AACAGGTTCG
ATCGCGGGGC ACAGCGTACG CAAGCACATG GAGCCTCCCG CCAGTGGCTC CCTGACCCCC
GAATCGATCA TGCGCAGCGT GGCCCGGCAT CTGCCCGAGC ACGCCATCGT CACCGAGGAG
TCGGGCATGG CGATGGCGTA CTACGGCCTG ACCGAATCGG CCGCGCCGCA CGATTTCCTG
ACCCTGTCTG GCGGGGCCAT CGGCAGCATG ATGGCGCTGT CGATCGGTGC CGGCATCGCC
TGCCCGGATC GCAAGATCGT CAACCTGCTT GGCGACGGCA GCGCGATGTA CACGGTGCAG
TCGCTGTGGA CGCAGGCTCG CGAGCAGATC GACGTCGTGA ACGTCATCTA CGCGAACCGC
GGCTACAAGA TCCTGAACAA CGAACTGAAG CGCGTCGGCG CGTCACAGGA CGGTGCACGC
GCCGCGTCGA TGTTCGATCT GCAAGATCCA TCGCTCGACT GGGTGGCACT GGCCGCGGGC
ATGGGCGTGG AAGCGGTCCG TACGGTCTCG GCCACGGACT TCGACGCCGC GTTCGCTTCC
GCGATGCAGC GCCGCGGGCC GATGCTCATC GAGGCGCTGA TCTGA
|
|---|
| Protein sequence | MNGAESLLRS LVACGVEVCF GNPGTSEMHF VAALDAVDGM RPVLGLFEGV VTGAADGYGR
MAGKPAATLL HLGPGLTNGL ANLHNARRAS SPIVNIVGDH AASHSRYEAP LTSDIQGFAR
PVSQWIHASA SALTVGADAA RAVQASMEAP GQVATLILPA DTAWSQADTV AAPLPLPSRA
PVSGATIANI AALVQRGVKT AFLLRGDALQ ERALHAAGKI AAKTGARLLS DTFAPRLQRG
AGRVPVERLP YFAEQVVEFL AGTELIVLVG AQPPVSFFAY PDKPSWLTPE GCRLAVLSHA
HEDGTGALKA LADVLGATGS IAGHSVRKHM EPPASGSLTP ESIMRSVARH LPEHAIVTEE
SGMAMAYYGL TESAAPHDFL TLSGGAIGSM MALSIGAGIA CPDRKIVNLL GDGSAMYTVQ
SLWTQAREQI DVVNVIYANR GYKILNNELK RVGASQDGAR AASMFDLQDP SLDWVALAAG
MGVEAVRTVS ATDFDAAFAS AMQRRGPMLI EALI
|
|---|
| |