| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1469 |
|---|
| Symbol | |
|---|
| ID | 4038272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1588375 |
|---|
| End bp | 1589124 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637976853 |
|---|
| Product | TatD-related deoxyribonuclease |
|---|
| Protein accession | YP_583621 |
|---|
| Protein GI | 94310411 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0084] Mg-dependent DNase |
|---|
| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.170381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.794785 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCA CAGCAGGCCT CGTGGACTTC CACTGCCATC TTGATCTCTA CCCGAACCAT
GCTGCGGCAG TCCAGGACGC GGAGGCCTCT GGCGTGTTCA CGCTGGCGGT GACGACGACA
CCTCGCGCCT GGCCTCGCAA TCACGAACTC GCGCAGCGCA CAAAGCATGT TCGAGCGGCT
CTGGGACTGC ATCCGCAGTT GGTCGCAGAA CGCGAGAACG AGATCGAGCT ATGGGATCAA
CACCTTGCGG AGACGCGCTA TGTCGGCGAA GTCGGGTTGG ACGCCGGCCC CCGGTTCTTC
AAATCGCTCG ATGCGCAGAA GCGTGTGTTC CAACACGTGT TGCAGCGTTG CGCGCAGGCC
GGTGACAAGA TCATTACGGT TCACAGCATC AGGTCGGCCA AGGCGGTACT CGATCTTGTC
GAAGCACATC TACCGCCCGA GCGCGGGAAA ATCGTTCTCC ACTGGTTCAC GGGAACAAAG
AGCGAGGCGA AGCGTGCGTT GGAATTGGGC TGCTACTTCT CGATCAACGC GGCAATGCTG
GGCAATGAGA GGCACGCACC GATGGTGCAG GCTATCCCCT TGGATCGGAT GCTGACGGAA
ACTGATGGTC CCTTCACTCG CACTGGCGAC AGGCCCTCGC AGCCGACGGA TGTAGTAAGC
GTCGTCGAGG AACTGGGCTG TTTACATCGG CTACCTGCAA ACGACATGGC CAGCCTTATT
CGTGACAACC TACGAGCATT GCTCGGATAG
|
|---|
| Protein sequence | MIATAGLVDF HCHLDLYPNH AAAVQDAEAS GVFTLAVTTT PRAWPRNHEL AQRTKHVRAA
LGLHPQLVAE RENEIELWDQ HLAETRYVGE VGLDAGPRFF KSLDAQKRVF QHVLQRCAQA
GDKIITVHSI RSAKAVLDLV EAHLPPERGK IVLHWFTGTK SEAKRALELG CYFSINAAML
GNERHAPMVQ AIPLDRMLTE TDGPFTRTGD RPSQPTDVVS VVEELGCLHR LPANDMASLI
RDNLRALLG
|
|---|
| |