| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1075 |
|---|
| Symbol | |
|---|
| ID | 4037872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1166857 |
|---|
| End bp | 1169607 |
|---|
| Gene Length | 2751 bp |
|---|
| Protein Length | 916 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637976456 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_583230 |
|---|
| Protein GI | 94310020 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.835373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.410772 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAG CCCTATCCGT ACCTGCCGCT GAAGGCGAGA ACACCGTGAC CGCGAGTGAA
TCGCCCGACC TTGCCGCGAC TTCCGCCAGG GCCGAGAAAG TCGGCAAGCA GGAAAAGCCC
GAGAAAGCCG AGAAGCAGTC GCCCATGATG CTGCAGTACC ACCGCATCAA GGCCGACCAC
CCGGACACGC TCCTTTTCTA CCGGATGGGT GACTTCTATG AGCTATTTCA TGACGATGCC
GAGAAGGCCG CGCGATTGCT CGACATCACG CTGACCGCGC GCGGCCAGTC TGGCGGTGTG
CCAATCCGTA TGGCCGGGAT CCCATTCCAT TCGGCTGACC AGTATCTGGC GCGCCTGGTA
AAGCTTGGCG AATCCGTGGC GATCTGCGAA CAGATTGGTG ACCCAGCGAC CAGCAAGGGC
CCGGTCGAGC GCAAAGTGGT GCGCATCGTT ACGCCCGGCA CGCTGACCGA TGCCGCCCTG
CTGCCAGACA AGTCCGACAC GTTCCTGTTG GCCGTGCACC AGCAGACCAC ACGCCGCGGC
GTCAGCAAGA CGGGCCTGGC ATGGCTGAAC CTGGCCAGTG GCGAACTGCG ACTCATGGAG
TGCGACGCCG CGCAGTTGTC CCGCGAACTC GAGCGTATCC GTCCTGCCGA GGTGCTGTAC
ACCGACGGCA TGGACCTTCC GACGCTGACA TGCGCGCGCA CCCGGTTGCC GGAATGGCAC
TTTGACCAGG AAGCCGGTAC TCGCCGCCTG CGCGAACAGA TCGGCGTGGC CAGCCTGGAG
CCGTTCGGCT GCTCGGGCCT GGGTGCCGCC CTAGGCGCTG CCGGCGCGCT GCTCAACTAT
GCAGCCACCA CGCAAGGCCA GTCTCTGCGG CACGTGCAGG GCGTCACTGT CGAGCGGGAA
TCCGAATTTG TCGGCCTCGA TTCGGCAACG CGCCGCAACC TCGAACTGAC CGAAACGCTG
CGTGGCACCG AATCGCCAAC GCTCTTCTCG CTGCTCGACA CATGCGCGAC GACGATGGGC
AGCCGCGCGC TGCGCCACTG GCTGCATCAT CCGTTGCGCG ACCCGGCCCT GCCGCGAGCG
CGTCAGCAGG CCATTGGGGC GCTGATCACA CAAGGGCCGG ACGGCTTGCG TGCCGTGCTG
CGCAAGCTTG CCGACGTCGA GCGGATCACC GCGCGACTCG CGTTGCTGTC GGCACGTCCG
CGCGATCTGT CCTCGCTGCG CGACACCCTG CGTGCCCTGC CCGATGTGCA GGCCGCCACG
GTCAGCTCAG AGGATGCGCC GCTGCTGGCG CAGACCCTTG AGGAAATCGA CATTCCGCAG
GACTGCCTGG AACTGTTGAT CCGCGCCGTG GCGGATGAAC CCTCAACGGT GATTCGCGAC
GGCGGCGTCA TCGCGCGCGG CTACGACAGT GAGCTCGACG AACTGCGCGA TATCTCGGAA
AACTGCGGTC AATTCCTGAT CGACCTGGAA ACCCGGGAGC GCGAGCGCAC AGGCATCACG
AACCTGCGCG TCGAATACAA CCGTGTTCAT GGCTTCTATA TCGAAGTCAC CAACGGGCAG
GCCGACAAGG TGCCCGACGA CTATCGACGC CGGCAGACCC TCAAGAACGC CGAACGCTAC
ATCACACCCG AGTTGAAAGC GTTCGAGGAC AAGGCGCTCT CGGCACAGGA TCGCGCGCTG
GCTCGCGAGA AGCAGCTCTA CGACGGTCTG CTGCAGGCCC TGCTGCCGCA TATCGGCAGT
CTGCGCCGCG TGGCCGGCGC GCTCGCCCGC CTCGACGTGC TTGCCACACT GGCCGAACGT
GCAAAAACAC TCGACTGGGT CCAGCCAGAA CGCGTCCAGG AGAACGTCAT CGACATCTCG
CAGGGCCGCC ATCCCGTCGT GGAAGGTCAG CTGGCCGCGG AGTCCGTCGC GTTCATCGCA
AACGACTGTC AGTTGAACGA GGCCCGCAAG CTGCTGCTGA TCACCGGCCC GAACATGGGT
GGTAAGTCGA CGTTCATGCG CCAGACCGCA TTGATCGTTC TGCTGGCCTG CGTCGGCGCC
TGGGTGCCGG CACGCCGTGC CGTGATTGGC CCGGTGGACC GCATCTTCAC GCGTATTGGG
GCCGCCGACG ACCTGGCGGG CGGTCGTTCG ACCTTCATGG TCGAAATGAC CGAAGCCGCA
GCCATCCTGC ACAACGCCAC GCCATCCAGC CTGGTGCTGA TGGATGAGAT CGGCCGCGGT
ACTTCGACCT TCGACGGTCT CGCCCTCGCG TGGGCCATCG CGCGTCATCT GCTATCCCAC
AACCGCAGCC ACACACTGTT TGCCACCCAT TATTTCGAGC TGACGCAACT GCCAGTCGAG
TTCCCGCAGG CTGCCAACGT GCACCTGTCA GCCGTGGAGC ATGGCGATGG CATCGTATTC
CTGCATGCGG TGCAGGACGG TCCGGCCAGC CAGAGCTACG GGCTGCAGGT GGCCCAACTG
GCGGGTGTTC CGCAACCGGT CATTCGCGCA GCGCGCAAGC ATCTCGCGTG GCTGGAAGAA
CAATCGGCGG ACGCCACGCC CACGCCGCAG ATGGATCTGT TCTCGGCGCA GTCTTCACCG
TCCGCAGACG ATGAAGATGA CAAATCGGCA GGCCAGTCCG CCGTGCCGCC CGCGCAGGCT
GCCACGCTGG AAGCGCTGGC CGATATCGAC CCGGACAGCC TCTCGCCGCG AGAAGCGCTC
GAGGCGCTGT ACCGACTCAA GTCCATCTCG GAGACCGCGC GAACGGTATG A
|
|---|
| Protein sequence | MSEALSVPAA EGENTVTASE SPDLAATSAR AEKVGKQEKP EKAEKQSPMM LQYHRIKADH
PDTLLFYRMG DFYELFHDDA EKAARLLDIT LTARGQSGGV PIRMAGIPFH SADQYLARLV
KLGESVAICE QIGDPATSKG PVERKVVRIV TPGTLTDAAL LPDKSDTFLL AVHQQTTRRG
VSKTGLAWLN LASGELRLME CDAAQLSREL ERIRPAEVLY TDGMDLPTLT CARTRLPEWH
FDQEAGTRRL REQIGVASLE PFGCSGLGAA LGAAGALLNY AATTQGQSLR HVQGVTVERE
SEFVGLDSAT RRNLELTETL RGTESPTLFS LLDTCATTMG SRALRHWLHH PLRDPALPRA
RQQAIGALIT QGPDGLRAVL RKLADVERIT ARLALLSARP RDLSSLRDTL RALPDVQAAT
VSSEDAPLLA QTLEEIDIPQ DCLELLIRAV ADEPSTVIRD GGVIARGYDS ELDELRDISE
NCGQFLIDLE TRERERTGIT NLRVEYNRVH GFYIEVTNGQ ADKVPDDYRR RQTLKNAERY
ITPELKAFED KALSAQDRAL AREKQLYDGL LQALLPHIGS LRRVAGALAR LDVLATLAER
AKTLDWVQPE RVQENVIDIS QGRHPVVEGQ LAAESVAFIA NDCQLNEARK LLLITGPNMG
GKSTFMRQTA LIVLLACVGA WVPARRAVIG PVDRIFTRIG AADDLAGGRS TFMVEMTEAA
AILHNATPSS LVLMDEIGRG TSTFDGLALA WAIARHLLSH NRSHTLFATH YFELTQLPVE
FPQAANVHLS AVEHGDGIVF LHAVQDGPAS QSYGLQVAQL AGVPQPVIRA ARKHLAWLEE
QSADATPTPQ MDLFSAQSSP SADDEDDKSA GQSAVPPAQA ATLEALADID PDSLSPREAL
EALYRLKSIS ETARTV
|
|---|
| |