| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0533 |
|---|
| Symbol | |
|---|
| ID | 4037322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 568475 |
|---|
| End bp | 569284 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637975908 |
|---|
| Product | 3-deoxy-manno-octulosonate cytidylyltransferase |
|---|
| Protein accession | YP_582688 |
|---|
| Protein GI | 94309478 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase |
|---|
| TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0389974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000996031 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCC CGACCTTTAC CGTTGTCATC CCTGCCCGCC TCGCCTCCAC GCGGCTGCCA
AACAAGCCGC TGGCCGACAT CGGCGGCCAT CCGATGATCG TGCGCGTGGC TGAACGCGCC
CACGCGTCGT CGGCCCAGCG CACCGTGGTG GCAACGGACT CCCAGGAAGT TGCGCAGGCC
TGCGCCGCGC ATGGCGTCGA AGCCGTGCTC ACGCGTGCCG ACCATCAGTC CGGCACCGAC
CGGCTGTCGG AAGTGGCGGC ACAGCTCGGG CTGGCCGATG ACGCGATCGT CGTCAACGTA
CAGGGCGACG AGCCGCTGAT CGAGCCGACG CTGATCGACG AAGTCGCGCT GCATCTGGCG
GCTCACACTG ACTGCGCGAT CGCCACGGCA GCGCATCCGC TGGACGACGT GGCCGAAGTA
TTCAACCCGA ACGTGGTGAA AGTGGTCTGC GACAACGCGG GCCGCGCGCT CTATTTCTCG
CGCGCGCCGA TTCCGTGGGC ACGCGATGCC TGGTCTGCCG TGCCGGCCCA GCCCGCGGCC
ACCGCGCAAG TCCCGCTGCC GGCCATGCCG GTGCTGCGTC ACATCGGCAT CTATGCCTAT
CGCGCGGGCT TCCTGCGCCG CTTCCCGACG TTGGCGGTCG CGCCGGTCGA ACAGACCGAA
GCGCTCGAGC AACTGCGTGC CATGTGGCAT GGCGAGCGGA TCGGCGTCAT GGTGACGGCG
GCTGCACCGG CGCCGGGCGT GGACACACCG GCGGACCTGG AACGCGTGCG TGCGCTATGG
GTGCAGGGCA TGGCTCAGGA AGGGCCGTGA
|
|---|
| Protein sequence | MSIPTFTVVI PARLASTRLP NKPLADIGGH PMIVRVAERA HASSAQRTVV ATDSQEVAQA
CAAHGVEAVL TRADHQSGTD RLSEVAAQLG LADDAIVVNV QGDEPLIEPT LIDEVALHLA
AHTDCAIATA AHPLDDVAEV FNPNVVKVVC DNAGRALYFS RAPIPWARDA WSAVPAQPAA
TAQVPLPAMP VLRHIGIYAY RAGFLRRFPT LAVAPVEQTE ALEQLRAMWH GERIGVMVTA
AAPAPGVDTP ADLERVRALW VQGMAQEGP
|
|---|
| |