| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0429 |
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| Symbol | |
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| ID | 4037217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 453223 |
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| End bp | 454368 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637975803 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_582584 |
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| Protein GI | 94309374 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.244047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.096876 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGCCGGC CCCAAGGCTT GGCAGGGGCA TGTTTTTGCA TATCGCCAGC TTCGCCTGAA
CGCACCCAAC ACCGTTCCAT CGTGCAGATC GGTCCGCACC AACTTCGCAA CAACCTGTTC
GTCGCCCCCA TGGCCGGGGT GACCGACCGG CCCTTCCGCC AGCTCTGCAA GCAGCTTGGC
GCGGGCTACG CGGTGTCCGA GATGGTTGCG TCGAACGCCC AGCTCTGGAA AAGCGAAAAG
ACCATGCGCC GCGCCAACCA CGCCGGCGAG GTGGAACCGA TCTCGGTGCA GATCGCAGGC
GCGGAGCCGT CGATGATGGC CGAGGCGGCC CGCTACAACG TGGACCGCGG CGCCCAGATC
ATCGACATCA ACATGGGCTG CCCGGCCAAG AAGGTCTGCA ACGTGGCCGC CGGTTCGGCG
CTGCTGCAGA ACGAGCCGCT GGTCGTGCGC ATCGTCGAAG CCGTGGTGGC CGCCGTGGGC
GACCGCGTGC CCGTCACGCT GAAGATCCGC ACCGGCTGGG ACCGCGAGCA CAAGAATGCG
CTGCGCGTGG CGCGCATGGT GGAAGACGCC GGCATCAGCA TGCTGACGAT CCACGGCCGC
ACGCGCGCCG ATCTCTATCA TGGCGAAGCC GAGTACGAGA CGATTGCCGC CGTCAAGTCG
TCGATCCGCA TCCCCGTGGT AGCCAACGGC GACATCACCA CGCCGCAGAA GGCCCGACAT
GTGCTGGCCG TGACCGGCGC CGACGCGATC ATGATCGGCC GGGCCGCGCA GGGCCGCCCC
TGGCTGTTCC GCGAGATCGA GCACTACCTG AAGACGGGCG AGCTGCTGCC CTCGCCAGAA
GTGGCCGAGA TCCGCGCGAT CATGAACCAT CACCTGGCGG ACCACTACGC GTTCTACGGC
GAGTTCACCG GAGTGCGCAC CGCCCGCAAG CATATTGCCT GGTACACGCG CGGCCTCAAG
GGCGCGAACC TGTTCCGGCA TCGCATGAAC ACACTGGAAT CCACCGACGC GCAACTCGCG
GCCGTCAACG CATTCTTCGA CGAACAGGCT GCAATTTCCG ACCGCCTGGT CTATGTCGAC
GAGAATGCCG CGCCGGACGA CGACGCGCTC GACAACAACA AGAAACGGGA ATTGCTTGCC
GCATGA
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| Protein sequence | MRRPQGLAGA CFCISPASPE RTQHRSIVQI GPHQLRNNLF VAPMAGVTDR PFRQLCKQLG
AGYAVSEMVA SNAQLWKSEK TMRRANHAGE VEPISVQIAG AEPSMMAEAA RYNVDRGAQI
IDINMGCPAK KVCNVAAGSA LLQNEPLVVR IVEAVVAAVG DRVPVTLKIR TGWDREHKNA
LRVARMVEDA GISMLTIHGR TRADLYHGEA EYETIAAVKS SIRIPVVANG DITTPQKARH
VLAVTGADAI MIGRAAQGRP WLFREIEHYL KTGELLPSPE VAEIRAIMNH HLADHYAFYG
EFTGVRTARK HIAWYTRGLK GANLFRHRMN TLESTDAQLA AVNAFFDEQA AISDRLVYVD
ENAAPDDDAL DNNKKRELLA A
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