| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0272 |
|---|
| Symbol | |
|---|
| ID | 4037058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 287945 |
|---|
| End bp | 288880 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637975645 |
|---|
| Product | RNA polymerase factor sigma-32 |
|---|
| Protein accession | YP_582427 |
|---|
| Protein GI | 94309217 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.809393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGCAG TCCTGTCTGC CGATCAAACC CAAGTTACCC GCCGTCTGCC CACGGCGCCC
CAGAATGCCG CCGCGAATGC CTTCGCACTG ACCTTCCCCG GCACACTGGG TAATCTGGAC
AGCTACATTC AGGCTGTCCA CCGCATCCCG ATGCTCACCC CCGAGGAAGA GCTCAGCCTG
GCTCGCGACC TGCGCGACAA CGACTCAGTC GATGCCGCCC GCCGCATGGT GATGTCGCAC
CTGCGTCTGG TGGTCTCCAT TGCTCGCCAG TACCTGGGAT ACGGCTTGCC TCACGCCGAC
CTGATCCAGG AAGGCAACAT CGGGCTGATG AAGGCCGTCA AGCGCTTCGA CCCCGAACAG
GGCGTGCGCC TGGTGTCGTA CGCGATGCAC TGGATCAAGG CCGAGATCCA CGAATACGTG
TTGAAGAACT GGCGCATGGT CAAGGTGGCC ACCACCAAGG CCCAGCGCAA GCTGTTCTTC
AACCTGCGCA GCCACAAGCA GGGCTCGCAT ACCTTCACGC CCGAGCAGAT CGAAGCCGTT
GCGCGCGAGC TCAACGTCAA GCCCGAGGAA GTGATGGAGA TGGAAACCCG CATGTCGGGC
GGCGATATGG CGCTGGAAGG CCAGATCGAG GACGGCGAGG AAGAGTTCGC GCCGATCGCC
TACCTTGCGG ATAACCACAA CGAGCCGACG CAGGTGCTGG AAGCCAAGCG CCACGACCGT
CTGCAGGTCG AGGGCCTGGA AGAGGCGCTG ACGAAGCTGG ACCCGCGCAG CCGCCGCATC
ATCGAGGCGC GCTGGCTCGA CGTCAACGAC GATGGCTCGG GCGGCGCCAC GCTGCACGAA
CTGGCCGACG AGTTCGGTGT ATCCGCCGAG CGGATTCGCC AGATCGAATC GGCGGCAATG
AAGAAGATGA AGGGCGCGCT GGCGGCATTC GCCTGA
|
|---|
| Protein sequence | MNAVLSADQT QVTRRLPTAP QNAAANAFAL TFPGTLGNLD SYIQAVHRIP MLTPEEELSL
ARDLRDNDSV DAARRMVMSH LRLVVSIARQ YLGYGLPHAD LIQEGNIGLM KAVKRFDPEQ
GVRLVSYAMH WIKAEIHEYV LKNWRMVKVA TTKAQRKLFF NLRSHKQGSH TFTPEQIEAV
ARELNVKPEE VMEMETRMSG GDMALEGQIE DGEEEFAPIA YLADNHNEPT QVLEAKRHDR
LQVEGLEEAL TKLDPRSRRI IEARWLDVND DGSGGATLHE LADEFGVSAE RIRQIESAAM
KKMKGALAAF A
|
|---|
| |