| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0131 |
|---|
| Symbol | |
|---|
| ID | 4036915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 137308 |
|---|
| End bp | 137844 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637975503 |
|---|
| Product | ATP-dependent protease peptidase subunit |
|---|
| Protein accession | YP_582286 |
|---|
| Protein GI | 94309076 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0440313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGT ATCACGGCAC CACCATCGTC AGCGTCCGCC GCGGCAATCA GGTCGCACTG
GGCGGTGACG GCCAGGTCAC GCTGGGCAAT ATCGTGATGA AGGGCACCGC GCGCAAGGTA
CGCCGCATCT ACAACGGCAA GGTGCTGGTT GGGTTTGCCG GCAGCACGGC CGATGCTTTC
TCACTGCTCG ACCGCTTCGA AGCCAAGCTC GAGAAGTACC AGGGCAACCT GACCCGCGCC
GCGGTGGATC TCGCCAAGGA CTGGCGCTCG GATCGCGCGC TGCGCCGCCT GGAAGCCATG
CTGATCACGG CAGACAAGGA CACCACGCTG GTCATCACTG GCAACGGTGA TGTGCTCGAC
CCCGAAGGCG GCATCGCCGC GATCGGCTCG GGCGGCGCCT ACGCGCAGTC CGCGGCCAAG
GCACTCGTGG AGAACACGGA GCTGCCGCCG AAGGACGTGG TCGAAAAGGC CCTGACCATC
GCGGGCGAGC TCTGCATCTA CACGAACACC AATTTCGTTA TCGAAACCCT CGACTGA
|
|---|
| Protein sequence | MEQYHGTTIV SVRRGNQVAL GGDGQVTLGN IVMKGTARKV RRIYNGKVLV GFAGSTADAF
SLLDRFEAKL EKYQGNLTRA AVDLAKDWRS DRALRRLEAM LITADKDTTL VITGNGDVLD
PEGGIAAIGS GGAYAQSAAK ALVENTELPP KDVVEKALTI AGELCIYTNT NFVIETLD
|
|---|
| |