Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmar_1108 |
Symbol | |
ID | 8567754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodothermus marinus DSM 4252 |
Kingdom | Bacteria |
Replicon accession | NC_013501 |
Strand | + |
Start bp | 1277719 |
End bp | 1281558 |
Gene Length | 3840 bp |
Protein Length | 1279 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | |
Product | DNA-directed RNA polymerase, beta subunit |
Protein accession | YP_003290387 |
Protein GI | 268316668 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.10244 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTGAGT TCAACGGCCA GCCGGGCACG AACGGACGGA TTTCGTTTGC CCGCACCAAG ACGGTCCTGG ACTACCCCGA CCTCCTGGAG ATCCAACTGC AGGCCTTCAA GGAATTTGTG CAGGACGACG TGCCGCCGGA GGAGCGTGAG GACAAAGGTC TTCAGGCGGT CTTCAAAGAG CACTTTCCGA TTACCGACAG TCGGGAGCGC TACATCCTGG AATTCCTCTA CTACGCGCTG GACACCCCCA AGCACACGAT CGAGGAGTGC CTGGCGCAGG GACTGACCTA TTCGGTCCCG CTCAAGGCCA AGCTCCGACT GTCGATCCTG GAAGACGAGG ACGAAGAGGA GGCCGGGGAG GCAATCGAAC AGGAAGTGTA CCTGGGCAAC CTGCCCTACA TGACCGAGCG CGGCACCTTC ATCATCAACG GTGCCGAGCG CGTGATCGTC TCGCAGCTCC ACCGGAGTCC GGGCGTCTTC TTCAGCCAGA GCGTCCACCC CAACGGGACG GAACTCTACT CGGCACGCGT CATCCCGCTG CGCGGCTCGT GGCTGGAGTT CTCCACGGAC GTGGCCGGCA TCCTGTGGGC TTATATCGAC CGGCGCAAGA AGATTCCGGT CACGACGCTG CTGCGCGCGC TGGGCTACTC CTCGGACGAG GACATCATCC AGCTCTTCGA GCTGGCCGAA GAGGCCGATA TTTCGACGAA GAAGGCTTTC AAAAACTATA TCGGCCGTAA GCTGGCCTCG TCGATTACGC TGGAACGCAT CATCGAGATC GTCGACGAGG ACACCGGCGA GGTCCTGGAG GAAAAGCGTG AGCGCGAGGT GCTTCTGCCG GCCGAACATG AGCTGCAGGA AGGGGACTAT GATCGGCTCA AAGAGGCCGG CATCACGAAA CTCTACCTTC TGAAGGAGGA CGAAGACGAA GAGGAGGCGC TCGACAAAAG CCTGCTGCTG AACACGCTTC GGAAAGACCC CACGCACTCG GAAGCCGAAG CGCTGGAATA CATTTACTTC CAGCTACGCG GGACGGAGAC GCCCGATCTC GAGACGGCGC GCGCGCTGCT GGACCGGCTG TTCTTCAATG AGAAGCGCTA CGACCTGGGG GCCGTCGGAC GCTACCGCCT CAACAAGCGG CTGCGTCAGA ATACCCCCAT GGATGTCCTC ACGCTCACGA AGGAGGACAT CGTCGCCATC GTGCGCGAGC TGGTGCTGCT GCAGAACGGC CGCAGCACGG TGGACGACAT CGACCACCTG GGCAACCGCC GCGTGCGCAC GGTGGCCGAG CAGCTGGCGG CGCAGTTCTC GGTGGGGCTG GCCCGCATGG CCCGTACCAT CAAAGAGCGC ATGAACCTGC GCGACGCCGA GAGCTTCACG CCGCAGGACC TGGTCAACGC CCGCACGATC GCCAGCGTCA TCAACACGTT CTTTGGAACG AACCAGCTCA GCCAGTTCAT GGATCAGACC AACCCGCTGG CCGAGCTGAC GCACAAGCGG CGTGTGTCGG CGCTGGGGCC GGGTGGTCTG ACGCGCGAGC GGGCCGGCTT TGAGGTGCGT GACGTGCACT ACACGCACTA CGGCCGTCTC TGCCCCATTG AGACGCCGGA AGGCCCCAAC ATCGGACTGA TCTGCTCGCT GACGGTGCAC GCCCGGATTA ACGAGTTCGG CTTTATCGAG ACGCCCTACC GGGTGGTGCG CAACGGCAAG GTGACGAACG AGATCGTCTA CCTGACGGCC GAGGAAGAGG ACAACGCGGT CATCGCGCAG GCGAACGCGC CCATCGACGA GGAAGGCAAC TTCCTCAACG AGTTCGTCAA GTGCCGCTAT CGCGGTGACT TCCCGTTGAT GCGGCCCGAG CAGATCCAGT ACATGGACGT GGCGCCCAAC CAGATCGTCT CGCCCTCGGC CAGCCTGATT CCGTTCCTGG AACACGACGA CGCCAACCGC GCACTCATGG GTTCGAACAT GCAGCGCCAG GCCGTGCCGC TACTGCGGCC CGAGGCGCCC ATCGTGGGTA CGGGCATGGA AGCCCGCGTC GCCCGCGACT CGCGCGCGCT GTTGGTGGCC GAAGGCCCGG GCGTCGTCGA GTACGTCGAT GCCGAGCGCA TCGTCATCCG TTACGATCAG GACCCCGAGG ACGCCGAGGT CAGCTTCGAG GAACCCGTCA AGGAGTACCG GCTGATCAAA TTCCGTCGCA CGAATCAGGA CACGTGCATC AACATGCGGC CGATCGTCAA AGTCGGCCAG CGCGTCGAGA AGGGCACGGT GCTCTGCGAC GGCTTTGCCA CCGAAAAGGG TGAGCTGGCC CTCGGCAAGA ACGTTCTGGT CGCCTTCATG CCCTGGCGCG GCTACAACTT CGAGGACGCC ATTGTGATCT CGGAGCGTCT GGTGGCCGAG GACGTCTTCA CCTCGGTGCA CATCGAGGAA TTCGAATGCC AGGTGCGCGA CACCAAGCGC GGCCAGGAAG AGCTTACGCG GGAAATCCCG AACGTCTCCG AGGAGGCCAC GAAGGACCTC GACGAGCGGG GCATCATCCG CGTGGGGGCC GAGGTGAAGG CCGGCGACAT CCTCGTGGGC AAGGTCACGC CCAAGGGCGA GACGGAGCCC ACGCCCGAAG AGAAGCTGCT CCGGGCCATC TTCGGCGACA AGGCCGGCGA TGTGAAGGAT GCCTCGCTGA AGGCGCCGCC AGGCATGAAG GGCGTCGTGA TCGACACGAA GCTCTTCAGC CGCCGCAAGC TCGATCCGGC CTCGAAGAAG CGGGAGCAGC AGCGGCTGGC CGAAATCGAC GAACAGCTGC AGCGGGACCT GGCCGAGCTT GACCGTCGCT TCTGGGAGAA GTTCTTCAAC CTGGTCGAAG GACAGGTCTC GGCCGGCGTC GAGACGCGTG AGGGCGACAT CGTGCTGCCC GAAGGCATGC CCTTCACGCG GGAAGCCTTC GAGAAGATCT CGCCGCTGCG GCTGAATCCG ATGTTCCCCT TCACGCAGGA CGAGACCGTA AACCGCAAGG TACAGAAGCT GCTCCGCAAC TACGAGCAGG TGCACCGGCG GATCACGGGC GAGGCCAAGC GCCTCAAGCA CCAGATCCAG ATGGGGGACG AGCTGCCGCC CGGGATCGTG CAACTGGCCA AAGTCTACAT CGCCCGCAAG CGCAAAATCC AGGTGGGCGA CAAGATGGCC GGCCGGCACG GCAACAAGGG CGTAGTGGCC AAGATCGTCC CGGTCGAGGA CATGCCCTTC CTTGAGGACG GGACGCCCGT GGACATTGTG CTCAACCCGC TGGGCGTGCC CTCCCGTATG AACCTGGGGC AGATTTACGA GACACTCCTC GGCTGGGCCG GCAAGGTGCT GGGCCGGAAG TTCGCCTCGC CGGTCTTCGA CGGCGCCACG CTCGACGACA TCAAGGCGCT GCTGCGCGAG GCGGGGCTGC CCGAGGACGG CCGCGTCCAG CTCTACGACG GCCGTACGGG CGAGCCGCTC GACGAAAAGA CCACGGTGGG TTACATCTAC ATGATGAAGC TCAACCACCT GGTCGAGGAC AAGATTCACG CCCGGTCGAT CGGCCCCTAC AGCCTCATCA CGCAGCAGCC GCTGGGCGGT AAGGCCCAGT TCGGCGGGCA GCGTCTGGGT GAGATGGAGG TGTGGGCGCT TTACGCCTAC GGTGCCGCGC ACACGCTCCA GGAAATGCTC ACCTACAAGT CGGACGACGT GCAGGGCCGC TCGAAGGCCT ATGAGGCCAT CGTCAAAGGT GAGAACCTGC CCGAGCCCGG CATCCCCGAA AGCTTCAACG TGCTGGTGCG TGAGCTGCAG GGCCTCGGCC TGGAAGTGCG GCTCGACTGA
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Protein sequence | MSEFNGQPGT NGRISFARTK TVLDYPDLLE IQLQAFKEFV QDDVPPEERE DKGLQAVFKE HFPITDSRER YILEFLYYAL DTPKHTIEEC LAQGLTYSVP LKAKLRLSIL EDEDEEEAGE AIEQEVYLGN LPYMTERGTF IINGAERVIV SQLHRSPGVF FSQSVHPNGT ELYSARVIPL RGSWLEFSTD VAGILWAYID RRKKIPVTTL LRALGYSSDE DIIQLFELAE EADISTKKAF KNYIGRKLAS SITLERIIEI VDEDTGEVLE EKREREVLLP AEHELQEGDY DRLKEAGITK LYLLKEDEDE EEALDKSLLL NTLRKDPTHS EAEALEYIYF QLRGTETPDL ETARALLDRL FFNEKRYDLG AVGRYRLNKR LRQNTPMDVL TLTKEDIVAI VRELVLLQNG RSTVDDIDHL GNRRVRTVAE QLAAQFSVGL ARMARTIKER MNLRDAESFT PQDLVNARTI ASVINTFFGT NQLSQFMDQT NPLAELTHKR RVSALGPGGL TRERAGFEVR DVHYTHYGRL CPIETPEGPN IGLICSLTVH ARINEFGFIE TPYRVVRNGK VTNEIVYLTA EEEDNAVIAQ ANAPIDEEGN FLNEFVKCRY RGDFPLMRPE QIQYMDVAPN QIVSPSASLI PFLEHDDANR ALMGSNMQRQ AVPLLRPEAP IVGTGMEARV ARDSRALLVA EGPGVVEYVD AERIVIRYDQ DPEDAEVSFE EPVKEYRLIK FRRTNQDTCI NMRPIVKVGQ RVEKGTVLCD GFATEKGELA LGKNVLVAFM PWRGYNFEDA IVISERLVAE DVFTSVHIEE FECQVRDTKR GQEELTREIP NVSEEATKDL DERGIIRVGA EVKAGDILVG KVTPKGETEP TPEEKLLRAI FGDKAGDVKD ASLKAPPGMK GVVIDTKLFS RRKLDPASKK REQQRLAEID EQLQRDLAEL DRRFWEKFFN LVEGQVSAGV ETREGDIVLP EGMPFTREAF EKISPLRLNP MFPFTQDETV NRKVQKLLRN YEQVHRRITG EAKRLKHQIQ MGDELPPGIV QLAKVYIARK RKIQVGDKMA GRHGNKGVVA KIVPVEDMPF LEDGTPVDIV LNPLGVPSRM NLGQIYETLL GWAGKVLGRK FASPVFDGAT LDDIKALLRE AGLPEDGRVQ LYDGRTGEPL DEKTTVGYIY MMKLNHLVED KIHARSIGPY SLITQQPLGG KAQFGGQRLG EMEVWALYAY GAAHTLQEML TYKSDDVQGR SKAYEAIVKG ENLPEPGIPE SFNVLVRELQ GLGLEVRLD
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