Gene Rmar_1077 details

Gene Information

• Locus tag: Rmar_1077
• ID: 8567718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: +
• Start bp: 1239337
• End bp: 1242780
• Gene Length: 3444 bp
• Protein Length: 1147 aa
• Translation table: 11
• GC content: 62%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003290357
• Protein GI: 268316638

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.139666
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTACCC GTCAACGCCT TTTCTGGAAG CGCATCGAAG CGTGCCGGTT GTGGTTGCTG 
GTGCTGGGGG TGTTGCTGCT GGGCGCCGGA CAGGTCCGGG CGCAGCAGCC GGAGGTCCGA 
ACGGCTTCGA AAGTGGACAC ACCTATTGCC TGGCTGAACG ACCCGTATCT CGAAAACGCT 
GCGCGACTCA GCCAGCCCCT GCGTCTGACA CTGGAGCAGG TAACGCGTGA GCAGGCACTC 
CGCATCATTG CGCAACAGGC CGGCCTGCGA CTTTCCTACG AGTGGAGCGA GGCGATGAAC 
GAGCCCGTTA CGCTCCGCCA GTCGCAGGGC ACCGTGCTGG ACGCGCTCTA CGCCGTGACG 
GCCGGCACCG ACCTGCGACT GATGATCACA CGCAGCGGCT ACCTGCTGGT CGGTCGTGCG 
CCGAAGTCCT CGGCCGAAAT GGCGGAGCCT GCTCCGGTCC AGCAGGAAGG AAGCATTGCC 
GGCCGCGTGA TTGACGCGGC CACCGGGGAA GGGCTTCCCG GTGTGAACGT CTTTCTGGTG 
GGTACCACGC TGGGAGCCAG CACCGACATA GACGGTAACT ACCGGATCGA CAATATCCCG 
GCCGGTCTCT ACACATTGCA GGCGTCCTTC ATCGGCTACC GGACGGCCAC GGTCGACAGC 
GTCGAGGTGC GTGCGGGCGA AGTCACCGTG GTCAACCTGG CGCTCGAGCA GGAAGTGCTC 
GGCCTGGAAG AGATCGTGGT GGTGGGCTAC GGTACGCAAC GGCGTCGGGA TGTGACAGGT 
GCCGTCTCGT CGGTGAACGT CGAAAGCCTG CAGGAGCTGC CCGTCACGAA CGTCGTGGAG 
GCGCTCCAGA CGCGGGCTCC CGGCGTGCGC GTGATCACCT CCGATGGACG GCCGGGCGGC 
AGCGGCCTGG AAGTTCAAAT CCGAGGCGCT CGATCGCTGA CAGCCAGCAA CCAGCCGCTG 
TTTGTCATCG ACGGGGTGCC CGTCGAAGGC GTAAATCTGT CCGAACTGAA TCTGAGCGAC 
ATTGTCTCGA TCGAGGTGCT GAAAGACGCC TCGGCGGCGG CCATCTACGG GGCGCGTGGT 
TCCAATGGCG TCGTGCTCAT CACCACGCGG CGCGGTCGCG AAGGCAAAGG TCGCTTTTCC 
TATGACGGTA GTATCGGATT TTCAGAAATA GCCAATCCGC TCGACGTTTT CAGTGGGCCG 
GAATTCATTG CGCTGCGGCG CGAGGCCTAT CGTGCGGCCG GTATGCCCAC CGACGACGAA 
ACGATTATGG ACCCTGTTGA ACGGGAGGTT GCGCAGAGCG GGCAATACGT CGACTGGCAG 
GAGGCCGTTC TGCGTACCGG TGTGCGTCAC AATCATAACC TCAGCTATTC CGGAGGATCG 
GACGTATTTC AGGTTTATGC CAGCGGCGGC TATCTGCGCG AAGAAGGGAT CCTGAAGCGC 
ACGTTCTTCG AACGAGGGAC TTTCCGGCTC AACACCGACT ACCGCCCGAT TTCCTGGCTC 
AAGTTCACCA CGAACTTCCT GCTGGCCCGG ACCAAGCAGG ATGTGGCGGG CGGCGAACGC 
TACGGCCCCT TCTGGACCGC TTATACGCTG TCACCGCTGG GGAAAATCTA TGACGAGCAG 
GGTCGGCTGC GGCCTTTTGT AACCGGCGAC CCGACCGCCT GGAATCCGCT CTATCAACTC 
CAGGAGTCCC GCGATGATCG CTGGAGCACG CGTGTGCTCG GCAATCTGGT GGCCCAGGTC 
AATCTGTATG AAGGCCTGAA TTATCAGCTC AACGCGGGCA TGGATTACAA CGCGACCAAA 
ATGGGCGAGT ACCGCACGAG CAACTATTCC GGCGGTGGGC AGCAGCGCGC CGTGCTGGGT 
TATGGCGAAA GCACCAGCTA CACGATCGAA AACATCCTGA CCTACGAGCG ACAGCTGGGC 
ACGCTGCATA ACCTGCACGC CACGCTGCTC TACAGCGTGC AGCGTGTGCA GGACGAAGAC 
CTGCAGGCCC AGACGCGCAA CCTGCCCAGT GATCTGCTCG ATTACAACGC GATCAGCAGC 
GGGGCCGATC TGCGCTCGCC TACCCGGAAC TATTCGGCCT GGAGCCTGGA GTCCTACATG 
GCCCGCCTGC GCTACAGCTT CGCGGATCGG TACCTGCTGA CGCTTACCGG GCGTATCGAC 
GGCTCCTCCA AGTTCGGGGC GGGCAACAAG TACGGCTTCT TCCCGGCCGT TGCCTTTGCC 
TGGCAGCTCA GCCAGGAACC CTTCCTGGCC TCCGTGCGCC AGATCGACAA CCTGAAACTG 
CGCCTGAGCT GGGGTCAGAC CGGTAACCAG GAAATCCCGA TCTATCAGTC GCTCGGGCAA 
ACCAGTCTGT TCTCCTATTC CTTTGGCGGG AATATCGTGA AAGGCTATGC GCCCGCCTCG 
CTCCCGAACC CCAACCTGAA GTGGGAAAAG ACCACGCAGT TCAACCTGGG GCTGGATGCC 
TCGCTTTTTG GCGGGCGCAT CATGTCCGCG ATCGACCTCT ACCGCTCCTG GACCTCGGAC 
CTGCTGCTCC AGCGGCAGAT CCCGGTCACG AACGGCTTTA CCAGCTTCCT GGATAACATT 
GGCAAGACGG AAAACTGGGG CATCGACTTC AGCCTGGATA CCTATCTGAT CAACCGTCCT 
GATTTTTCCT GGCAGGTGAA CCTGAACTGG TCGCTCAGCC GCTCGAAGAT CGTCCGGTTG 
ACCGGACAGA CCGACGAGGC GGGCAATCCG GTGGATGACA TCGCCAACCG CTGGTTCATC 
GGACACCCGA TCGGCGTCAT CTACGACTGG GTCTTCGACG GCATCTTCTG TTCGGGAGGG 
CCTTACGACG AGGCGGCCTG CCAGCAGGAG ATCGCCAGCA GCGCCCAGCC CGACGCCCAG 
CCCGGCGACA TCCGGGTCAG GGACCTGAAC GGCGACGGCG TGATCAACGA CCAGGACCGC 
ACCATCGTCG GCACGACCGA ACCGGACTGG TACGGTGGTC TGGGGACTAC GCTGACCTAT 
AAGAACTTCG ATCTGAGCGT CTTCTTTACG GCCGTGCAGG GGGTGACCCG CTACAATCCC 
TACATCTACC CGCGGGCTTA CGACCCGAAC ATTGTGGTCA TCTTTCTGCA GGGGCGGGCC 
AACCAGATCG CCGTCGATTA CTGGACGCCG GAGGATACGG ATGCCGATTT CCCCCGGCCC 
AATTATCAAC GCGAAATGCC GCGCTACCTT TCGGCCCGGG CCGTCTGGGA TGCCTCCTAC 
GTGCAGCTCC GCAATATCAC GCTGGGCTAC ACGCTACCGG CCTCGCTGGC GGCCCGCATC 
GGCGTCGATC GCATGCGGCT CTATCTCTCG GGGAATAACC TCTACTACTG GACGGACTTC 
GAGTCCTACA ACCCCGAGCA GGGCGACGTC GAGGGCTACC CGGTAGCCCG GACGCTGACC 
TTTGGCGTGA ATCTGTCCTT CTGA 

 

Protein sequence

MATRQRLFWK RIEACRLWLL VLGVLLLGAG QVRAQQPEVR TASKVDTPIA WLNDPYLENA 
ARLSQPLRLT LEQVTREQAL RIIAQQAGLR LSYEWSEAMN EPVTLRQSQG TVLDALYAVT 
AGTDLRLMIT RSGYLLVGRA PKSSAEMAEP APVQQEGSIA GRVIDAATGE GLPGVNVFLV 
GTTLGASTDI DGNYRIDNIP AGLYTLQASF IGYRTATVDS VEVRAGEVTV VNLALEQEVL 
GLEEIVVVGY GTQRRRDVTG AVSSVNVESL QELPVTNVVE ALQTRAPGVR VITSDGRPGG 
SGLEVQIRGA RSLTASNQPL FVIDGVPVEG VNLSELNLSD IVSIEVLKDA SAAAIYGARG 
SNGVVLITTR RGREGKGRFS YDGSIGFSEI ANPLDVFSGP EFIALRREAY RAAGMPTDDE 
TIMDPVEREV AQSGQYVDWQ EAVLRTGVRH NHNLSYSGGS DVFQVYASGG YLREEGILKR 
TFFERGTFRL NTDYRPISWL KFTTNFLLAR TKQDVAGGER YGPFWTAYTL SPLGKIYDEQ 
GRLRPFVTGD PTAWNPLYQL QESRDDRWST RVLGNLVAQV NLYEGLNYQL NAGMDYNATK 
MGEYRTSNYS GGGQQRAVLG YGESTSYTIE NILTYERQLG TLHNLHATLL YSVQRVQDED 
LQAQTRNLPS DLLDYNAISS GADLRSPTRN YSAWSLESYM ARLRYSFADR YLLTLTGRID 
GSSKFGAGNK YGFFPAVAFA WQLSQEPFLA SVRQIDNLKL RLSWGQTGNQ EIPIYQSLGQ 
TSLFSYSFGG NIVKGYAPAS LPNPNLKWEK TTQFNLGLDA SLFGGRIMSA IDLYRSWTSD 
LLLQRQIPVT NGFTSFLDNI GKTENWGIDF SLDTYLINRP DFSWQVNLNW SLSRSKIVRL 
TGQTDEAGNP VDDIANRWFI GHPIGVIYDW VFDGIFCSGG PYDEAACQQE IASSAQPDAQ 
PGDIRVRDLN GDGVINDQDR TIVGTTEPDW YGGLGTTLTY KNFDLSVFFT AVQGVTRYNP 
YIYPRAYDPN IVVIFLQGRA NQIAVDYWTP EDTDADFPRP NYQREMPRYL SARAVWDASY 
VQLRNITLGY TLPASLAARI GVDRMRLYLS GNNLYYWTDF ESYNPEQGDV EGYPVARTLT 
FGVNLSF