| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_3654 |
|---|
| Symbol | |
|---|
| ID | 8014501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | + |
|---|
| Start bp | 3699155 |
|---|
| End bp | 3701131 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644826217 |
|---|
| Product | glycogen debranching enzyme GlgX |
|---|
| Protein accession | YP_002977436 |
|---|
| Protein GI | 241206340 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.328672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGGGA ACAGTTCGGC GCAAGCCGGC GCGATCGTCT TCGAGACCGG CGTCGAATTT
GCCGTATGGT CGCATCATGC CGCACAGATC GAACTCTGCC TCTTCGAGGA TGACGGCAAC
AGGGAATTCG CGCGCCTGCC GATGGCGCGC GACAGCAACC ACATCCATCG ACTGTTTGTC
GACGGATTGA AGGCGGGCGC GCGCTACGGC TATCGCGCCG ACGGTATTTA TGCGCCCGAT
AACGGCCTCT GGTTCGATCC CTCCAAACTG CTGATCGATC CCTACGCCAA GGAGATCGAT
AGGCCGTTCC GCTACGATCC CCGCCTCGGC ATCTATGGCG AGGACAGCCA GGATCTGATG
CCGAAGGCGA TTGTCACCAC CGATACCCGA GCCGCGATCA GCAAGCCGCT CTTCAAACCG
GGCGGCTTTA TCTATGAGGT GGCGGTACGG CCCTTCACCA TTCTCCATCC CGACGTGCCG
GAGGCTGAGC GCGGCACGGT CGCAGCGCTT GCCCATCCCT CCGTCGTCGC ACATCTGAAG
CGGATCGGTG TCGATGCCGT CGAACTGATG CCGATCACCG CCTGGATCGA CGAACGCCAC
CTTCCGCCGC TCGGCCTCAC CAACGGCTGG GGCTACAATC CCGTCGCCTT CATGGCGCTC
GACCCGCGGC TCGTGCCTGG CGGCATGACC GAGTTGCGCC AGACGGTCGC GGCCCTCCAT
GCCGAAGGCA TCGCCGTCAT CCTCGACCTC GTCTTCAACC ATACCGGCGA GAGCGACCGT
TACGGCGCGA CGCTGTCGCT GCGCGGCCTC GACAACCTGC ATTATTATCG CCACGCCCAG
AATTGCCCGG GCGAACTCGT CAACGACACA GGCACCGGCA ACACGCTCGC CTGCGATCAT
CCTGAGGTTC GCCGCCTCGT CATCGACAGC CTACGCCATT TCGTGCTCAA CGCCGGCGTC
GACGGTTTTC GCTTCGATCT CGCCCCGGTA CTCGGCCGCA CCGCGACGGG CTTCGAACGC
GACGGAACAC TGGCCTCGAT CCTCTCCGAC GATGTGCTTG CCGACCGGAT CATGATCGCC
GAACCCTGGG ATATCGGCCC GGGCGGTTAC CAGCTCGGCA ATTTCCCGCC GCCCTTCCTT
GAATGGAACG ACCGGGTTCG CGATGATCTG CGCTGCTACT GGCGCGGCGA CGATTGGAAG
ACCGGCGCGC TGGCAACCGC ACTTGCCGGC TCCTCCGACA TCTTCTCCCG CAACGACGGC
AACGAGACGC GCAGCGTCAA TTTTCTCGCC GCCCATGACG GCTTCACGCT GATCGATCTC
GTCTCCTATG CCGCAAAGCA CAACGACGCC AACGGCGAAC ACAATCGCGA CGGCCATAAC
GAGAATCATT CCTGGAACAA CGGCGTCGAG GGGGAAACCG TCTATCCGAC GATCCGCAAG
CGTCGCCGGG ACGATGTGAT GGCGCTGATC TCAACGCTTT TTGCCACCCG CGGCAGCATC
ATGCTGACGG CGGGCGACGA GGGCGGCCGC AGCCAGCACG GCAACAACAA CGCCTATTGC
CAGGACAACG AGATCACCTG GCTGGACTGG AAGGCGTTGG ACGAGGGTCT CATCGCCCAT
ACCGCCTTCG TTGCAGGGTT ACGTCGCCGT TTCACCGTTT TCTCCGAAAC GGGCTTCCTG
GCGGGAAATG GCGATGTCGA ATGGATTTCG CTTTCCGGCG AACCGATGAG CGTTGCCGAA
TGGGAGACGC CGTCGCTCTC CACCCTCGGC ATGCTGTTAT CGACCGGTGA CCGCTCCTCT
CGCGGCAGGC AGACCAGGCT TGGTGTGCTT TTCAATCGCT CGGGGAGCCG CCAATTTTTC
ACGCTGCCTT CTCAGAGCGA ACCGGGCTGG CGCCAGTTGA CCCCGGATGG AGCGAAGAAA
ACCGGTGGCC GTGCAACCGT CGAGCCACGC TCGATTGCCT TTTTCGTAGA AAATTGA
|
|---|
| Protein sequence | MRGNSSAQAG AIVFETGVEF AVWSHHAAQI ELCLFEDDGN REFARLPMAR DSNHIHRLFV
DGLKAGARYG YRADGIYAPD NGLWFDPSKL LIDPYAKEID RPFRYDPRLG IYGEDSQDLM
PKAIVTTDTR AAISKPLFKP GGFIYEVAVR PFTILHPDVP EAERGTVAAL AHPSVVAHLK
RIGVDAVELM PITAWIDERH LPPLGLTNGW GYNPVAFMAL DPRLVPGGMT ELRQTVAALH
AEGIAVILDL VFNHTGESDR YGATLSLRGL DNLHYYRHAQ NCPGELVNDT GTGNTLACDH
PEVRRLVIDS LRHFVLNAGV DGFRFDLAPV LGRTATGFER DGTLASILSD DVLADRIMIA
EPWDIGPGGY QLGNFPPPFL EWNDRVRDDL RCYWRGDDWK TGALATALAG SSDIFSRNDG
NETRSVNFLA AHDGFTLIDL VSYAAKHNDA NGEHNRDGHN ENHSWNNGVE GETVYPTIRK
RRRDDVMALI STLFATRGSI MLTAGDEGGR SQHGNNNAYC QDNEITWLDW KALDEGLIAH
TAFVAGLRRR FTVFSETGFL AGNGDVEWIS LSGEPMSVAE WETPSLSTLG MLLSTGDRSS
RGRQTRLGVL FNRSGSRQFF TLPSQSEPGW RQLTPDGAKK TGGRATVEPR SIAFFVEN
|
|---|
| |