| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_0628 |
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| Symbol | |
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| ID | 8011809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012850 |
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| Strand | - |
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| Start bp | 663105 |
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| End bp | 666284 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644823218 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002974471 |
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| Protein GI | 241203375 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.730556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0496906 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTATCCA GGCTCAGCGA CAGCAAGCAG TTGCGGCGCG TGTTGAAGAA TACCCGCGTT
TCGTTTCTGG TTTCGTCGCT CGTCGCCCTC GTCGTCATCA TGGTCGGCTT CGGGCTCGAC
CGGGCCAATA CTGCGTCTCA TGTGCGCGAA CTTCATATCC GCACGGAAAA CGAGACCAAC
CTGATCCGCG CCCGGGTGAT GGCCGAGATC AATTTGGACC TCAGCGTCGT GCGCGATCTG
ACGAACCTGA TCTCCGTCAG CGCGGCCAAC GGAGAGGAGA TGGAGCGCCA GATCAACTGG
CTGCTAATCC AGAACCCGTC TTTCATTCAT ATCGCCGTCG CGCCTGATTT CATCATCCGC
GACATCCACC CACCGCAATC CGGCAATGAG CGGATCGGCC GCGACGTGCG CGAAACTCTC
TTCTTTCGCC AAGTGATGAC TGGCGCGGCC GGCGACCAGT CGGCGCGCTT CTACGGCCCG
ATCAGCACCG ACGGCCGCGA CGCCTTTGCC ATCTTCTTCC CGGTTTACGT CAAGGAGAAC
GGCCAGCGGC GGATCTGGGG GGCGGTCGAA GTCGCCATCG ACCAGCAAAT GTTTTACCAG
GCGACCGGGC TGATGCCGGC GCGCGACCGC GAAAACCGTG AGCGTTATCC GCATCTCGGC
CATCTTTCGA TCGCCATCCG CGATATCGGC GCGGCGGCCG CGACCAACGC CGCTTTGCCG
CCGCCGTTCT TCGGTTCGTC CGATATCGAT GACAAGAATC CGATGCGCCA GAAGATCGGC
TTTGCCGGCG GCAAGTGGGA GCTTTCCGCG GTCCCTAATA GCGGCTGGAA CGCGATACCC
GAAAACCGCA CCGAGCTGCG TCTGATCATC CTTGCCGCCG GCTTCATCAT CATCGTGCCG
ATCTTCTTCG CGACCCTGTT GCTCGGCGAG CGCAATCGCA ACATCACCGC GCTGGAGACC
CGCGAGGCAA AATTGCTGGA ACTGTCGCAG CGGCTCAACC TGGCGCTGGA ATCCTCCAAT
ATCGGCATCT GGGAGCTGGA GGATCATTCG AGCAGTCTGC TCTGGGATGC CCGTGCCGCG
GCTCTGCACG GCAAAGCGGC GAAAGAAGGA AGCCGGGTGC TCGACGAATG GCTGGCGGCG
ATCCTGCCCG AGGATCGTGA AACTGCCGAA GTGCATTTCT TCAGCTGCAG CATTGCCGGC
GTTGCCTGCA CGGCGCAGTA CCGCATCCTG CTTGGCAACG GCGGCATCCG CCATCTGCGC
TCGGTCGGCG CCTTCTATAC GGATGCAGCC GGCGTCAGCA AGACGATCGG CATCGTCTGG
GACGTGACCG CCGATGCGGA GATCACCGAC ACGCTGCGCA AGGCCAAGGA TATGAGCGAG
GTCAAGAATG CCGAGCTGGA GCTGGCGCTT GACGAGCTCT CGAGCCGCGA GGGCGAGCTC
GCCGAGCTTT CCAGCCGGCT CGACCTGGCG CTCAATTCCT ATCAGTGCGG CATATGGGAG
GCGCGGCCTG GCCTCGGCGG CTCGATCTGG AACGAGCGGA TGCACGAACT CTATGGGCTT
ACACCGCGCA ACGGCTTCAT GACCGAGGAG ATCTGGCTTA GCCGCATCCA CCCCGAGGAC
AGGAGCCTGG CGCTCGAAAG CGCGCGTCAC TTCAAGCACA ACGGCGATAC GCACACCCTC
GTCTGCCGGG TGATCGTCGA CGACGGCTCG GTGCGCTATG TGCGCTCGGT CGGCAAGGTC
CACCAGACGG GGACTAGCGA GATGAAGATC ATGGGCATCG CCTTCGACGC CACCGAAGAC
GTGCTGATGA CGATCCGGCT GAAAGCCGCC AAAGACGATG CGGTCGCCAA GAATATCGAG
CTCGAGCTTG TCAAAAACAG GATCGAGCAC AATTCACTGC ACGACCCGCT GACCGCACTC
GCCAACCGCC GCAAGCTCGA CATCGCGCTC GAAAGTCTGA CCCATGACGG CCGCCAGCAG
CGGCAGAAAT TCTCGATCCT GCACATCGAC CTCGACCGCT TCAAGGACAT CAACGACACG
CTCGGCCATG CCGCCGGCGA TGCGATGCTG GTACACGCCT CGAAGGTGCT CGCCAAGAAT
GTCCGCGGCA GCGACATCGT CGCGCGCATC GGCGGCGACG AATTCGTCAT CCTCGCCCTC
GACGTCGGCG ACAAGGAGAT GGCGCAGCTT TCGACGCGGA TCATCGAGGA AATGCGCCAG
CCGATCGATT TCCAGGGTTT TTCCTGCCGC TGCGGCGTGT CGATCGGGAT TGCGCTTGCC
AACGGCATCC ATGTCGATGC GCGCAAGGTG CTGATCAATG CCGATATCGC GCTCTACCGC
GCCAAGAGCA CGGGCCGCAA CCGCTTCGAA TTCTTCAATC ACAATCTCCA GGCCGATATC
ATCAACACCA AGCGCACGGC CGACGAGATC CTCGCCGGCA TCGACAATGG CGAATTCACC
GCTTGGTATC AGCCGCAATT CTGCGCCCGG ACGATGGAAC TCACCGGCGT CGAGGCGCTA
GTGCGCTGGA AGCACCCCTC CAAGGGGTGG CTCGCGCCTG ACAAGTTCCT GCGCATCGCC
GACGAGATCA ATGTCGTGCA GATGCTCGAC CGGATCGTGC TGGAAACTGC GCTGCACGAC
AAGATGCGCT GGACGGCGCG CGGCATTGTG GTGCCCAAGG TCTCTGTCAA TGTTTCGGCC
CGACGGCTGC ATGACGGCAG CCTGCTGGAA TCGCTCGCCG ACCTGCATAT CCGTCCGGGC
GAGCTCTCCT TCGAACTGGT GGAATCGATA TTCCTCGACG AGAGCGAGGA CGTCGTCTCG
CAGAATCTCG AGCGCATCAA GGCGCTCGGC ATCGATATCG AGATCGACGA TTTCGGCACC
GGCCATACCT CGATCGTCAG CCTGTTGAAG CTGAAGCCGA AGCGGCTGAA GATCGACCGC
CAGCTGGTGC AGCCGATCGT CAATGCCTCG CAGGAGCGCG CATTGGTCAG CTCGATCATC
GAGATCGCCC GCTCACTCGG CGTCGAGACG GTGGCCGAAG GGGTGGAGAC GGCAGCACAT
GCCGCGCTGC TGCGCGATCT CGGCTGCGAC ATCCTGCAAG GCTATGCCTT CTCGCAGCCG
CTCTCCTTCG ACGATTTCAC CGCGGAAGCG ACCGGAACGG GGTGGCGGCT GGCGTCCTGA
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| Protein sequence | MLSRLSDSKQ LRRVLKNTRV SFLVSSLVAL VVIMVGFGLD RANTASHVRE LHIRTENETN
LIRARVMAEI NLDLSVVRDL TNLISVSAAN GEEMERQINW LLIQNPSFIH IAVAPDFIIR
DIHPPQSGNE RIGRDVRETL FFRQVMTGAA GDQSARFYGP ISTDGRDAFA IFFPVYVKEN
GQRRIWGAVE VAIDQQMFYQ ATGLMPARDR ENRERYPHLG HLSIAIRDIG AAAATNAALP
PPFFGSSDID DKNPMRQKIG FAGGKWELSA VPNSGWNAIP ENRTELRLII LAAGFIIIVP
IFFATLLLGE RNRNITALET REAKLLELSQ RLNLALESSN IGIWELEDHS SSLLWDARAA
ALHGKAAKEG SRVLDEWLAA ILPEDRETAE VHFFSCSIAG VACTAQYRIL LGNGGIRHLR
SVGAFYTDAA GVSKTIGIVW DVTADAEITD TLRKAKDMSE VKNAELELAL DELSSREGEL
AELSSRLDLA LNSYQCGIWE ARPGLGGSIW NERMHELYGL TPRNGFMTEE IWLSRIHPED
RSLALESARH FKHNGDTHTL VCRVIVDDGS VRYVRSVGKV HQTGTSEMKI MGIAFDATED
VLMTIRLKAA KDDAVAKNIE LELVKNRIEH NSLHDPLTAL ANRRKLDIAL ESLTHDGRQQ
RQKFSILHID LDRFKDINDT LGHAAGDAML VHASKVLAKN VRGSDIVARI GGDEFVILAL
DVGDKEMAQL STRIIEEMRQ PIDFQGFSCR CGVSIGIALA NGIHVDARKV LINADIALYR
AKSTGRNRFE FFNHNLQADI INTKRTADEI LAGIDNGEFT AWYQPQFCAR TMELTGVEAL
VRWKHPSKGW LAPDKFLRIA DEINVVQMLD RIVLETALHD KMRWTARGIV VPKVSVNVSA
RRLHDGSLLE SLADLHIRPG ELSFELVESI FLDESEDVVS QNLERIKALG IDIEIDDFGT
GHTSIVSLLK LKPKRLKIDR QLVQPIVNAS QERALVSSII EIARSLGVET VAEGVETAAH
AALLRDLGCD ILQGYAFSQP LSFDDFTAEA TGTGWRLAS
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