| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_1730 |
|---|
| Symbol | |
|---|
| ID | 6980467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011369 |
|---|
| Strand | + |
|---|
| Start bp | 1768243 |
|---|
| End bp | 1771746 |
|---|
| Gene Length | 3504 bp |
|---|
| Protein Length | 1167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643396453 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_002281243 |
|---|
| Protein GI | 209549326 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0919435 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCTG GTTTCGATGC GAAGAAGCTT GCGGCCATTG CCGAGCCGCT GACGATCGGC
AATGTGCCTG TCGGCCTCGA ACCGCTGCTG CTGGCTGAGC TCGCCCGCGC GGGCGAGCCA
GTCGCCTATG TCATATCAGA CGGCCACCGC ATGGCCGATC TCGAACAGAT GCTGGGCTTC
GTCGCCCCCG ACATTCCGGT TCTCACCCTG CCGGCCTGGG ACTGTCTGCC CTATGACCGC
GTCTCGCCGA GCGCCGATAC TTCGGCCCGC CGGCTTGCCG CACTCGGCGG CCTCATCGCC
CACCGGAGGA AGCCGCATGC GGCGATCGTG CTCGTCACCG CCAATGCCAT GCTGCAGAAG
GTGGCGCCGC AGGATGTCAT CGAAAGCCTG AGCTTTTCGG CCCGTCCCGG CAACCAGCTG
CGGATGGACG ATCTCGCCGG GCGCCTGGAA CGCAACGGCT TCGACCGCGT CGCAACCGTT
CGCGAAGTCG GCGAATATGC CGTGCGCGGC GGCATTCTCG ACGTCTTCGT GCCGGGTTCG
GAAGAGCCGG TCCGCCTCGA CTTCTTCGGC GACACGCTGG AATCGATCCG CAGCTTCGAT
CCGGCCAGCC AGCGCACCAC CGGCCAGGTG CGCTCCCTCG ATCTCAATCC GATGAGCGAG
GTGACGCTGA CGCCGGACAC GATCAGCCGC TTCCGCAAGA ATTATCTCTC GGCTTTCGGC
GCAACGACGC GTGACGACGC GCTCTATCTC GCCGTCTCCG AAGGTCGCCG TTATCCGGGC
ATGGAGCACT GGCTGCCGCT TTTCTATGAG AAGCTCGATA CCGTCTTCGA TTATCTCAGC
GGCTTCCGTA TCGTCACCGA CAACACGGTG CGTGAGGCGG CCGAGGAGCG ATCCAAGCTG
GTTTTCGATT ATTGCGACGC CCGCCTGCAT TCCGGTCAGC CGGCCAAGGG CCAGATGGCG
CAGGGCACGC CTTATAAGCC GGTGACGCCG GGCCAGCTCT ATCTCGACAG CAAGCTTTTC
GCCAAAACCC TCGACGCGCT CGGCGCGATC CGCATCAGCC CCTTCAACGA AATCGAAGGC
GAGGCGCGCC GCGTCGTCAA TATCGAGGCC CGCCAAGGCC AGCGCTGGGC CCGCTCGAAT
GCCGAAGGCG GCGGCGATGC CGAGCGCATC AACATTTTCG ACGTCGTCGT CAAGCATATC
GCCGACCGCC GCGCTGCCGG CGCGAAAGTG CTGGTCACCG CCTGGACCGA AGGCTCGCTG
GAGCGCCTGC TGCAGGTGCT GAACGAACAC GGCCTGGAAA AGGTCAAGCC GATCGAGGCG
TTGAAGGATC TCGGTTCGCT GGCGAAGGGC GAGGCCGCCG CCGCGGTGCT CAATCTCGAA
TCCGGATTCG AGGCTGGCGA TCTCGTCGTC ATCGGCGAGC AGGATATTCT CGGCGACCGC
ATGGTGCGCC GCTCCAAGCG CCGCAAACGC GCCGCCGATT TCATCGCCGA GGTCGCCGGC
CTCGACGAGG GCTCGATCGT CGTCCACGCC GAACACGGTA TCGGCCGCTT CATCGGGTTG
AAGACCATCG AGGCCGCGGG CGCGCCGCAT GCCTGCCTCG AACTGCAATA TGCCGACGAG
GCGAAACTCT TCCTGCCGGT CGAAAACATC GATCTTCTCT CCCGCTACGG CGGCGAGGGC
ACCGAGGCGC AGCTCGACAA GCTCGGCGGC GGCGCCTGGC AGATGCGCAA GGCCAAGCTG
AAGAAGCGCC TGCTCGACAT GGCCGATGCG CTGATCCGCA TTGCCGCCGA GCGGCTGACC
CGCCACGCAC CGATGCTGAC GACGCCGGAC GGCCTATACG ACGAATTTGC CGCTCGCTTC
CCCTATGATG AGACCGAGGA CCAGGACAAC GCCATCGACG CCGTCCGCTC CGATCTCGGC
GCCGGCCGGC CGATGGATCG TCTCGTCTGC GGCGACGTCG GCTTCGGCAA GACGGAAGTG
GCCTTGCGCG CCGCCTTCGT CGCCGCGATG AATGGCGTCC AGGTTGCCAT CGTCGTGCCG
ACGACACTGC TTTCCCGCCA GCATTTCAAG ACCTTTTCCG AGCGATTCCG CGGCCTGCCG
GTGCGCATCC AGCAAGCCTC ACGCCTGGTT GGGGCCAAGG AACTGGCGCT GACCAAGAAG
GAAGTCGCCG AAGGCAAGAC CGATATCGTC GTCGGCACCC ATGCGCTGCT CGGCGCCGGC
ATCAAATTCG CCAATCTCGG CCTGCTCGTC ATCGATGAGG AGCAGCATTT CGGTGTCAAG
CACAAGGAGC GGCTGAAGGA GCTGAAGAGC GACGTGCATG TGCTGACGCT GTCGGCGACG
CCGATCCCGC GCACACTGCA GCTTGCGATG ACCGGCGTGC GCGAACTATC GCTGATCACC
ACGCCGCCGG TCGACCGTAT GGCGGTGCGC ACCTTCATCT CGCCCTTCGA CAGCTTGGTC
ATCCGCGAGA CGCTGATGCG CGAGCATTAT CGCGGCGGCC AGAGCTTCTA TGTCTGCCCG
CGGCTTGCTG ATCTCGCCGA TGTGCATGCC TTCCTGCAGT CCGACGTGCC GGAGCTGAAG
GTCGCCGTCG CCCACGGCCA GATGCCGGCC GGCGAACTCG AAGACATCAT GAACGCCTTC
TATGAAGGCC GCTACGACGT GCTGTTGTCC ACAACCATCG TCGAATCCGG CCTCGATGTG
CCGACGGCCA ACACGCTGAT CGTCCACCGC GCCGATATGT TCGGCCTTGC CCAGCTCTAC
CAGCTGCGCG GCCGCGTCGG CCGCTCGAAG GTGCGCGCCT TCGCGCTCTT CACCCTGCCT
GTGAATAAGG TGCTGACGGC AACCGCCGAC CGCCGGCTGA AGGTGCTGCA GTCGCTGGAT
ACACTCGGCG CCGGCTTCCA GCTGGCCAGC CACGACCTCG ATATCCGCGG CGCCGGCAAC
CTGCTCGGCG AGGAGCAGTC CGGCCACATC AAGGAAGTCG GCTTCGAACT CTACCAGCAG
ATGCTGGAAG AGGCGGTCGC CGAGGTCAAG GGTGTCGACG AGATCCACGA CACCGGCTGG
TCGCCGCAAA TCTCCGTCGG CACGACGGTG ATGATCCCGG AGGGCTATGT GCCCGACCTG
CATTTGCGCA TGGCGCTTTA CCGCCGTCTC GGCGAAATCA CCGAACTCAA GGAGATCGAC
GGCTTCGGCG CCGAGATGAT CGACCGTTTC GGGCCGATGC CGATCGAAGT CCAGCATCTC
TTGAAGATCG TCTACATCAA GTCGCTCTGC CGCACCGCCA ATGTCGAAAA GCTCGATGCC
GGCCCGAAGG GCGTCGTCGT GCAGTTCCGC AACAAGGAAT TCCCCAACCC GGCGAATCTC
GTCGGCTATA TCGGCAAGCA GGGCGCCATG GCGAAGATCC GCCCCGACCA CAGCCTGTTC
CTGACCCGCG ACCTGCCGAC ACCGGAAAAA CGCCTGCAGG GCGCTGCCGT GATCATGACG
CAGCTGGCCG AGATGGCGAA ATAA
|
|---|
| Protein sequence | MIPGFDAKKL AAIAEPLTIG NVPVGLEPLL LAELARAGEP VAYVISDGHR MADLEQMLGF
VAPDIPVLTL PAWDCLPYDR VSPSADTSAR RLAALGGLIA HRRKPHAAIV LVTANAMLQK
VAPQDVIESL SFSARPGNQL RMDDLAGRLE RNGFDRVATV REVGEYAVRG GILDVFVPGS
EEPVRLDFFG DTLESIRSFD PASQRTTGQV RSLDLNPMSE VTLTPDTISR FRKNYLSAFG
ATTRDDALYL AVSEGRRYPG MEHWLPLFYE KLDTVFDYLS GFRIVTDNTV REAAEERSKL
VFDYCDARLH SGQPAKGQMA QGTPYKPVTP GQLYLDSKLF AKTLDALGAI RISPFNEIEG
EARRVVNIEA RQGQRWARSN AEGGGDAERI NIFDVVVKHI ADRRAAGAKV LVTAWTEGSL
ERLLQVLNEH GLEKVKPIEA LKDLGSLAKG EAAAAVLNLE SGFEAGDLVV IGEQDILGDR
MVRRSKRRKR AADFIAEVAG LDEGSIVVHA EHGIGRFIGL KTIEAAGAPH ACLELQYADE
AKLFLPVENI DLLSRYGGEG TEAQLDKLGG GAWQMRKAKL KKRLLDMADA LIRIAAERLT
RHAPMLTTPD GLYDEFAARF PYDETEDQDN AIDAVRSDLG AGRPMDRLVC GDVGFGKTEV
ALRAAFVAAM NGVQVAIVVP TTLLSRQHFK TFSERFRGLP VRIQQASRLV GAKELALTKK
EVAEGKTDIV VGTHALLGAG IKFANLGLLV IDEEQHFGVK HKERLKELKS DVHVLTLSAT
PIPRTLQLAM TGVRELSLIT TPPVDRMAVR TFISPFDSLV IRETLMREHY RGGQSFYVCP
RLADLADVHA FLQSDVPELK VAVAHGQMPA GELEDIMNAF YEGRYDVLLS TTIVESGLDV
PTANTLIVHR ADMFGLAQLY QLRGRVGRSK VRAFALFTLP VNKVLTATAD RRLKVLQSLD
TLGAGFQLAS HDLDIRGAGN LLGEEQSGHI KEVGFELYQQ MLEEAVAEVK GVDEIHDTGW
SPQISVGTTV MIPEGYVPDL HLRMALYRRL GEITELKEID GFGAEMIDRF GPMPIEVQHL
LKIVYIKSLC RTANVEKLDA GPKGVVVQFR NKEFPNPANL VGYIGKQGAM AKIRPDHSLF
LTRDLPTPEK RLQGAAVIMT QLAEMAK
|
|---|
| |