| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3509 |
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| Symbol | |
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| ID | 3963359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3900537 |
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| End bp | 3902270 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637918325 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding protein |
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| Protein accession | YP_524745 |
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| Protein GI | 89902274 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGA CTGGCGCATG GCTGGCACGT TACGCCCTGG AGCAACTGGG CATCCGATAC
ACCTTTGGCA TCCCCGGAGT GCACAACACC GAGCTCTATG ACGAGCTCAA CAAGTCAGAA
CTGATCACGC CCATGCTGGT GAGCCACGAA GGTGGTGCCT CCTTCATGGC CGATGGTTTG
AGCCGCCTGT CGGATTCGGT GGGTACGCTG CTGGTGGTGC CGGCCGCAGG TCTGACCCAT
GCAGCCAGTG GCATTGGCGA AGCCTTTTTG GACGGCGTGC CCATGCTGGT GATTTGTGGC
GGCATTCGCA CCGACATTGA CTGGAAGTTC CAATTGCACG AGATGGATTT GCACCAGTTC
ATGAAGGGCA TCACCAAAGC CACCTACAAG ATTGAACACA CCCGCGATGT GGTCTCCACG
CTGTTTGAAG CCTATCGAGT GGCCACCACT GGAGAACCCG GCCCGGTGTT TATCGAATTG
CCGATGAATG TACAAATGTT CCCCGATGAC GTGGGTGAAC TGCCGCGCTG GGCTGCCCCG
GCCTTGCCGG AACCGGCCGC AGCCACCCCG ATTGATGCTG CCGTGGCGTT GCTGCAAAAC
GCCAGGAAGC CGGGCCTCTT CGTGGGCTGG GGCGCACGTG ATTGTTCAGC AGAATTGATG
GCCTTGGCCG ACCACCTGCA GGCCCCGGTA GCCACTACCT TGCAAGGCTT CTCGGTGTTC
CCGGCGAGCC ACCCATTACA CGCGGGATTC AGCTTTGGGC CGTCAGCGGT GCCGGCAGCA
CGCAACGCGT TTGTCGATTG CGACGTGCTG CTGGCCGTCG GCACCCGGTT TGGTGAAATC
GCGTCGGGGA GTTTTGGCCT GACGGTACCG TCGCAGTTGA TTCACGTTGA CATCTGCTCC
CATGTCTTCA ACGCCAACTA CCCGGCCCAA GTGGCAATTG AGGGTGACGC CAGGGTGGTG
GTGCCACAAC TGTTGGCCGC TTTGCGCAGG GTCCAGCCTG CAGCGCGTGC CGAGACGGGA
TTGGCAGGCC GCATCGCCGC CGACAAAAAA GCCTACCGCC AAACCTGGTA CGACCACGAC
AGCCAAGGTC GCGTCAACCC GGCGCGCTTT TTTGACGCGC TGCGTGCCGC CACGCCAGCA
GACGCCGTGA CGGTGGTGGA CGACGGCAAT CACACCTACC TGACCGCTGA ACTTTGGCCC
ATTTTGACGG CCAAGTCGGG CATTCTGCCG AGCGATTTCA ACGCCATGGG CTATTCCATC
CCCGCCGCCA TGGGTGCCAA GCTGGCACGC CCGGACGTGC CGGTGAACTG CATCGTCGGG
GACGGGTGCT TTCGCATGAC CTGCATGGAA ATCATCACCG CTACCCAGTA CCAACTGGGC
GTGGTGTATT ACGTGTTTTG CGATGGCGAG CTGTCGCAGA TTTCACAGGC GCAGGAGATT
CCGTACAACC GAAAACCGTG TACGGTGCTT AGCACCATCG TGATTGATGG GGTGGCCCGC
GCAGTGGGCG CCGGATACTT CAAGATTGCC ACCGATGCCG ACCTGACCGA GCAGATTGCC
GCAGCGAACG CCATGGCCAA AAAAGGTCAG CCGGTGATTG TGGAAGTCAG CATGGATTAC
AGCAAACGCA CGGCGTTTAC CGAAGGCGTG GTCAAGACCA ACTTCCAGCG TTTTACACTC
AAACAAAAAG CCCGTGCTCT GGGTCGTGCT GTGGTGCGCA AGGTAACTGG TTGA
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| Protein sequence | MKKTGAWLAR YALEQLGIRY TFGIPGVHNT ELYDELNKSE LITPMLVSHE GGASFMADGL
SRLSDSVGTL LVVPAAGLTH AASGIGEAFL DGVPMLVICG GIRTDIDWKF QLHEMDLHQF
MKGITKATYK IEHTRDVVST LFEAYRVATT GEPGPVFIEL PMNVQMFPDD VGELPRWAAP
ALPEPAAATP IDAAVALLQN ARKPGLFVGW GARDCSAELM ALADHLQAPV ATTLQGFSVF
PASHPLHAGF SFGPSAVPAA RNAFVDCDVL LAVGTRFGEI ASGSFGLTVP SQLIHVDICS
HVFNANYPAQ VAIEGDARVV VPQLLAALRR VQPAARAETG LAGRIAADKK AYRQTWYDHD
SQGRVNPARF FDALRAATPA DAVTVVDDGN HTYLTAELWP ILTAKSGILP SDFNAMGYSI
PAAMGAKLAR PDVPVNCIVG DGCFRMTCME IITATQYQLG VVYYVFCDGE LSQISQAQEI
PYNRKPCTVL STIVIDGVAR AVGAGYFKIA TDADLTEQIA AANAMAKKGQ PVIVEVSMDY
SKRTAFTEGV VKTNFQRFTL KQKARALGRA VVRKVTG
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