Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3485 |
Symbol | |
ID | 3963204 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 3876494 |
End bp | 3877675 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637918302 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_524722 |
Protein GI | 89902251 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACCTC TCAAAGGCAT CACCATTGTC ACCCTGGAGC ACGCCATTGC GGCGCCCTTC GCCACCCGCC AGCTGGCCGA CCTGGGTGCA CGCGTCATCA AGATCGAGCG CCCCGGCGTA GGCGACTTTG CCCGCGGCTA CGACAACCGG GTGCGCGGCA TAGCCTCGCA CTTTGTCTGG ACCAACCGCA GCAAGGAAAG CCTGACGCTT GATGTCAAGC ACCCCGAGGC GCAAAAAATC CTCAAACGCA TCATCGACGA AGAAGCCGAC GTGGTGGTGC AAAACCTGGC TCCCGGTGCT GCAGCCCGCC TGGGCCTGTC GTATGAGGTG TTGAGCCAGG CCAAGCCCGG CATCATCGTC TGCGATATTT CCGGCTATGG CGACAACGGC CCTTACCGCG ACAAAAAAGC CTACGACCTG CTGATCCAGA GCGAGGCCGG TTTTGTGTCC GTCACCGGCA CCGAAGACAC ACCTTCCAAG GCCGGGCCAT CGATTGCCGA CATTGCCGCC GGTATGTATG CCTACACCAA CATCCTGGCC GCACTGATGC ACCGCCAACA GACTGGCGAG GGCCAGCACA TCGACATTTC CATGCTCGAG GCCCTGACCG AGTGGATGGG CTACCCGCTG TACTACAGCC TGGACGGTGC CGCGCCGCCC AAGCGCACCG GTGCCAGCCA CGCCACCATC TACCCCTACG GCCCGTTCCC GGCTGGTGAC GGCAAGACCG TGATGCTGGG CCTGCAAAAC GAACGCGAGT GGAAAGCCTT TTGCGAGCAA GTGTTGCAGC AGCCCGAGTT GGCTGCAGAC GAGCGTTTTG CCAGCAACCC CAAGCGGGTG GCGTTGCGCA CCACGCTGTA CGCGCTGATC GTGCAAACCT TCTCCAGCCT GAGCGCAGCG CAAGTGGTGC AGCGCCTGGA AGCGGCGCAA ATTGCCAACG CCCAAGTCAA CACCATGGCC GAGGTCTGGG CGCATCCGCA ACTTCAGGCA CGCAAGCGCT GGGCTTCGGT GGACACCTCG GTGGGCACGG TGCCCGCCCT GCTGCCCCCG GGCTCCTGGA GCAAGGGTGC ACCCCGCATG GATGCGGTGC CGGCCCTGGG TCAGCACACC GATGGCATTC TGGCCACGCT GGGCTACAGC GCGGAACAAT TCGCCGCATT ACACGCTGAA GGTGCCGTGT GA
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Protein sequence | MQPLKGITIV TLEHAIAAPF ATRQLADLGA RVIKIERPGV GDFARGYDNR VRGIASHFVW TNRSKESLTL DVKHPEAQKI LKRIIDEEAD VVVQNLAPGA AARLGLSYEV LSQAKPGIIV CDISGYGDNG PYRDKKAYDL LIQSEAGFVS VTGTEDTPSK AGPSIADIAA GMYAYTNILA ALMHRQQTGE GQHIDISMLE ALTEWMGYPL YYSLDGAAPP KRTGASHATI YPYGPFPAGD GKTVMLGLQN EREWKAFCEQ VLQQPELAAD ERFASNPKRV ALRTTLYALI VQTFSSLSAA QVVQRLEAAQ IANAQVNTMA EVWAHPQLQA RKRWASVDTS VGTVPALLPP GSWSKGAPRM DAVPALGQHT DGILATLGYS AEQFAALHAE GAV
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